Uppsala Software Factory - RAVE
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Manuals
- AVE for single-crystal averaging
- COMA to find NCS mask using
local correlation maps
- COMAP to combine maps during
multiple-crystal averaging
- COMDEM to combine multiple
domain maps
- CRAVE to auto-generate a C-shell
script to do N cycles of averaging over M crystal forms, each
with or without NCS
- DATAMAN to manipulate reflection datasets
- ESSENS to do real-space searches
for fragments (e.g., helices) or molecules
- IMP to improve NCS operators
- MAMA to manipulate masks
- MAPFIX add spacegroup and symmetry
operators to a CCP4 map
- MAPMAN to manipulate maps
- MASKIT to find cross-crystal averaging
mask using local correlation maps (VRML world
of the correlation map at 0.40 cut-off level for the lipase example
discussed in the manual, together with the refined model, chain A of
PDB entry 1TCB)
- MAVE for multiple-crystal averaging
- NCS6D to find NCS operators
- PROF to generate electron-density profiles
(only in Uppsala at present)
- SITE2RT to find RT-operators between
(heavy atom or selenium) sites in different crystal forms
- SOLEX to extract the best solutions from
ESSENS runs (and to attempt to auto-trace helices and strands)
(A real Solex)
- SPANCSI investigate if your NCS-related
molecules have very different average temperature factors, and if so,
take special measures during averaging
Description
RAVE is a suite of programs for single and multiple domain,
single and multiple crystal real-space electron-density averaging.
It also contains tools for the detection of secondary structure
elements in macromolecular electron-density maps.
The package succeeds the previous A suite.
Platforms
RAVE is available for SGI and DEC ALPHA/OSF1 computers. In addition to
the RAVE programs, you need several CCP4 programs (SFALL, RSTATS
and FFT; these are available from CCP4, Daresbury) and O (for displaying
maps and providing spacegroup and other operators). The package includes an
averaging tutorial.
References
- GJ Kleywegt & TA Jones, Acta Cryst., D53,
179-185 (1997).
- GJ Kleywegt & TA Jones, Acta Cryst., D52,
826-828 (1996).
- GJ Kleywegt & TA Jones, CCP4 Proceedings, 1994,
59-66.
- TA Jones, CCP4 Proceedings, 1992, 91-105.
(Another type of RAVE ...)
Latest update at 6 February, 1999.
