Uppsala Software Factory - OMAC index
OMAC is the generic
name for a set of files (O macros, C-shell scripts, small programs, etc.)
which are available for all O users, courtesy of other O users. Each link
below points to the corresponding file on the O ftp server.
If you would like to contribute something, please E-mail it to
Gerard.
If you like, you can
ftp the entire set of files contained in the OMAC directory.
The following types of file are available (among others):
- O-macros (usually with filename extension ".omac");
execute from within O with: @macro_file_name
- ODL files (usually with filename extension ".odl");
draw from within O with: draw odl_file_name
- O datablock files (usually with filename extension ".odb");
read into O with: read odb_file_name
- Fortran programs (usually with filename extension ".f");
follow the instructions in the file
- compiled SGI programs (usually in all upper case characters);
just execute them
- C-shell scripts (usually with filename extension ".csh");
execute outside O by typing the file name
- residue-property tables (usually with filename extension ".dat")
- MAMA macros; execute from within MAMA with: @ omac/filename
(mutatis mutandis, also for MOLEMAN2, MAPMAN, DATAMAN, LSQMAN, ODBMAN;
file extensions: .mamac for MAMA, .momac for MOLEMAN2, .mapmac for
MAPMAN, .datmac for DATAMAN, .lsqmac for LSQMAN and .odbmac for ODBMAN)
- text files (usually with filename extension ".txt")
- PostScript files (usually with filename extension ".ps")
This index contains the following categories:
Check the latest
directory listing to see the directory sorted by modification date
(to see if a file has been updated recently, for instance).
O MACROS
O macros can be executed with the @ command in O.
- acid_base.omac
Contributed by: Alwyn
Description: colour acidic, basic and other residues in different
colours (red, blue and yellow, respectively)
- align2.omac
Contributed by: Gerard
Description: runs LSQMAN in BRute_force mode to superimpose any two protein
chains, apply the best operator, read the molecule back into O and draw its
CA trace
- alt_colours.omac
Contributed by: Gerard
Description: alternative colouring scheme for a molecule (C green,
N cyan, O magenta, S yellow)
- auto_cartoon.omac
Contributed by: Gerard
Description: run YASSPA, paint_ramp, sketch_auto & save the cartoon
macro to a file
- axes.omac
and axes.odl
Contributed by: Sherry Mowbray
Description: draw red XYZ axes cross at (0,0,0)
- bad_flip.omac
Contributed by: Alwyn
Description: colour CAs with bad pepflips red
- bad_rsfit.omac
Contributed by: Alwyn
Description: colour CAs with bad RS-fit values red
- ball_and_stick.omac
Contributed by: Gerard
Description: make a ball-and-stick model of an object
- boxy.omac,
cd.pdb and
db.odl
Contributed by: Gerard
Description: macro etc. to delineate a part of 3D space, e.g., if you want to know
where a blob of density is, such as your yet-to-be-traced molecule (981216)
- cnos_colours.omac
Contributed by: Alwyn
Description: paints C, N, O and S in their default O colours
- colour_code.omac
Contributed by: Gerard
Description: the user types a colour; the macro prints the integer colour code to which
it corresponds
- date.omac
Contributed by: Gerard
Description: print current date and time as O message
- del_many_obj.omac
Contributed by: Gerard
Description: delete several objects in one go
- edb.omac
Contributed by: Gerard
Description: edit an O datablock
- kill_db_db.omac
Contributed by: Gerard
Description: delete O's Lego library datablocks
- make_surface.omac
Contributed by: Gerard
Description: make and draw a solvent-accessible surface; uses
surface.csh and VOIDOO
- make_vdwsurf.omac
Contributed by: Gerard
Description: make and draw a van der Waals surface; uses
surface.csh and VOIDOO
- mask_atom.omac
Contributed by: Gerard
Description: set mask ON in small volume around and atom
- move_to_origin.omac
Contributed by: Gerard
Description: move a molecule to the origin at (0,0,0)
- mr_packing_check.omac
Contributed by: Gerard
Description: check packing of Molecular Replacement solutions; you
must copy & edit this file !
- ncs_maps.omac
Contributed by: Christina Divne
Description: example macro showing how to look at models and maps of
several NCS-related molecules simultaneously
- ncs_symm_sphere.omac
Contributed by: Gerard
Description: template macro for use of Sym_sphere with STRICT NCS
- newo.omac
Contributed by: Gerard
Description: set up a new O database file
- nice_residue_colours.omac
Contributed by: Gerard
Description: paint residues of a molecule in nice colours
- paint_bfac.omac
Contributed by: Aaron Oakley
Description: colour ramp a molecule by temperature factor
- paint_restype.omac
Contributed by: Alwyn
Description: paint a particular residue type in one colour
- pre_oops.omac
Contributed by: Gerard
Description: do RS-fit, pep-flip and RSC and create datablock files
needed for running OOPS
- qalpha.omac
Contributed by: Gerard
Description: quick generation of arbitrarily long alpha-helices
- qbeta.omac
Contributed by: Gerard
Description: quick generation of arbitrarily long beta-strands
- rainbow.omac
Contributed by: Alwyn
Description: draw a CA-trace coloured red to blue from N to
C-terminus
- repeat.omac
Contributed by: Gerard
Description: repeat any O command(s) N times
- reverse_chain.omac
Contributed by: Gerard
Description: invert the chain direction of part or all of your
protein molecule
- save_view.omac
Contributed by: Gerard
Description: save current view matrix (for reproducible views, slides,
use with GS2MOLSC)
- set_prefs.omac
Contributed by: Gerard
Description: set several datablock entries interactively
- sketch_setup.omac
Contributed by: Gerard
Description: set up sketch types and parameters
- sphere_atom
Contributed by: Alwyn
Description: draw a sphere of atoms around an ID-ed atom
- transl_zone.omac
Contributed by: Gerard
Description: translate a zone of a molecule by a user-specified (Cartesian)
vector (981216)
- unmask_atom.omac
Contributed by: Gerard
Description: set mask OFF in small volume around an atom
- update_5_10.omac
Contributed by: Gerard
Description: update O database from 5.9.* to 5.10 (940720)
- update_5_9_1.omac
Contributed by: Gerard
Description: update your O database file to work with O release
5.9.1 (930810)
- yasspa.omac and
lefth.odb
Contributed by: Alwyn & Gerard
Description: do YASSPA on a molecule and produce colour-coded CA-trace. Now
also includes left-handed helical fragments (981216).
- zone_one_type.omac
Contributed by: Gerard
Description: O macro to draw an object containing all copies
of a certain residue type (that you input). This enables you to
inspect all cysteines, or all tryptophans, or all waters, etc. in
your structure without too much clutter.
O DATABLOCKS
O datablocks can be read into O with the Read_form command. Note that
some of the following datablocks contain O macros, which can be
executed with the @ command.
- add_waters.odb
Contributed by: Gerard
Description: macro etc. to add waters without PEKPIK
- different_radii
Contributed by: Aaron Oakley
Description: version of .cpk_radii in which the radius
increases with each row of the periodic table
- all_on_off.odb
Contributed by: doug@zinc.uoregon.edu and suggested by his local Unix operator
Description: a datablock containing two one-line macros that
switch all objects on or off without using the menus ! This means
that this mechanism can be used inside macros.
- baton_moving_atom.odb
Contributed by: Gerard
Description: 3.8 A "radius" icosahedron (=CA-CA distance)
- build_alpha_beta.odb
Contributed by: Gerard
Description: macros etc. to quickly build stretches of FIVE
helix/strand residues in "ideal Ca conformation"; use this to
speed up going from Bones to an initial Ca trace
- cis_proline.odb
Contributed by: Gerard
Description: change a trans-Pro into a cis-Pro
- colour_demo.odb
Contributed by: Laurent Maveyraud
Description: macro etc. to show colours and their names
- debug.odb
Contributed by: Gerard
Description: macros to toggle debugging mode on/off
- dial_speed_sgi.odb
Contributed by: Gerard
Description: two macros to toggle between slow and fast dials on SGIs
- gerard_moving_atom.odb
Contributed by: Gerard
Description: solid, cyan 3D arrow
- id.odb
Contributed by: Gerard
Description: example ID-label template
- message.odb
Contributed by: Gerard
Description: example message template including RS-fit and pepflip
values
- morten_moving_atom.odb
Contributed by: Morten
Description: solid, magenta octahedron
- multi_menu.odb
Contributed by: Jim Pflugrath
Description: a clever multi-O-menu system; check it out !
- mutator.odb
Contributed by: Alwyn
Description: toggle between your normal and an extensive
MUTATE_REPLACE menu; check it out !!
- old_dials.odb
Contributed by: Phil Evans
Description: original dial boxes
- pause.odb
Contributed by: Gerard
Description: a macro to prevent O from consuming CPU cycles while you
are taking a break
- pictures.odb
Contributed by: Gerard
Description: toggle between your normal menu and one with space for
lots of objects (when you're taking pictures, for example)
- pre_dials.odb
Contributed by: Phil Evans
Description: use different dial boxes
- rebuild_menu.odb
Contributed by: Gerard
Description: Gerard's favourite rebuilding menu
- rsfit_pyr.odb
Contributed by: Gerard
Description: RS-fit data for pyroglutamate
- rsfit_sugar.odb
Contributed by: Gerard
Description: RS-fit definition for various saccharides
- rsfit_water.odb
Contributed by: Gerard
Description: RS-fit definition for water (HOH/O1)
- rt_unit.odb
Contributed by: Gerard
Description: identity (NCS/LSQ) operator in O format
- sidechain_tors.odb
Contributed by: Phil Evans
Description: only use sidechain torsions
- alt_sc_tors.odb
Contributed by: Thierry Fischmann
Description: a different approach to tor_residue. The sidechain
torsions CHI1 and CHI2 occur twice for each residue that has more
two CHIs. This means that all sidechain torsions can be modified
at the same time, but you can still modify PHI and PSI if you want
to. It is an alternative to Phil Evans' sidechain_tors.odb.
- sketch_menu.odb
Contributed by: Gerard
Description: toggle between your normal menu and a special sketch
menu
- solid_hbonds.odb
Contributed by: Morten
Description: render H-bonds as seven solid spheres
- spink.odb
Contributed by: Gerard
Description: based on ideas by Dave Lawson and Neil Spink: to measure
distances to and coordinates of non-atoms (e.g. density peaks,
symm_obj atoms)
- zone_each_type.odb
Contributed by: Gerard
Description: an O datablock containing several macros. This
is an extension of the idea behind the zone_one_type macro. It will draw
an object for each of the twenty types of amino acid. Handy if you
want to check if there are interesting clusters in your structure,
e.g. of charged residues, or of aromatic residues, etc.
O RESIDUE PROPERTY TABLES
Residue property tables can be used to assign property values to
residues, which can subsequently be used to colour your molecule,
etc. They are assigned with the Db_Table command in O.
- table_alpha.dat
Contributed by: Gerard
Description: propensity for alpha helices
- table_antigenicity.dat
Contributed by: Gerard
Description: antigenicity values for amino acid types
- table_beta.dat
Contributed by: Gerard
Description: propensity for beta strands
- table_coil.dat
Contributed by: Gerard
Description: propensity for loops/turns/coils
- table_flexibility.dat
Contributed by: Gerard
Description: flexibility values for amino acid types
- table_generic.dat
Contributed by: Gerard
Description: template file for your own tables
- table_hydropathy.dat
Contributed by: Gerard
Description: hydropathy values for amino acid types
- table_kind.dat
Contributed by: Gerard
Description: integer code for residues: 1=protein, 2=nucleic acid, 3=water,
0=other (981216)
- table_mass.dat
Contributed by: Gerard
Description: masses for amino acid types
- table_mutability.dat
Contributed by: Gerard
Description: mutability values for amino acid types
- table_occur.dat
Contributed by: Gerard
Description: relative occurrence
- table_solv_access.dat
Contributed by: Gerard
Description: solvent-accessibility values for amino acid types
- table_volume.dat
Contributed by: Gerard
Description: volumes for amino acid types
OTHER O-RELATED FILES
The following is a mish-mash of various O-related files and programs.
Some can be used directly with O, other contain information,
templates or scripts for other programs. Read the files to
see what they do.
- plt2mol.pl
Contributed by: Charlie Bond
Description: Perl script to convert a single Oplot object to
Molscript 2.0 external object interface format, for getting maps
from O into Molscript (981216)
- ruler.odl
Contributed by: Gerard
Description: draw a ruler at (0,0,0); use move_object to move it to
where you are
- ofaq
and software.faq
Contributed by: Gerard
Description: frequently asked questions (+ answers) about software
from Uppsala and a script (ofaq) to query it
- torsion_refi
Contributed by: many O users
Description: collection of Torsion and Refi dictionaries for common
non-protein molecules and residues
- bdna.txt
Contributed by: Mark Glover
Description: several O files for working with DNA
- prot_rna_dna.refi
Contributed by: Phil Evans
Description: connectivity file for proteins, RNA & DNA
- ringless_conn.dat
Contributed by: Phil Evans
Description: ringless connectivity file
- test_o_colours.ps
and test_o_colours_black.ps
Contributed by: Gerard
Description: test some O colours on your laser printer (generated
with colour_demo.odb); the second file shows the same but with
a black background
- sybyl_torsion.txt
Contributed by: Jay Pandit
Description: SYBYL script to generate torsion datablocks for O
- make_pair.f
Contributed by: Sherry Mowbray
Description: generates an O macro to draw lines between equivalent
CAs of two mols
- GS2MOLSC
and gs2molsc.f
Contributed by: Rams
Description: convert "O" .gs_real datablock to MolScript "by rotation"
code
- O2MOL
and o2mol.f
Contributed by: Janet Smith
Description: convert .gs_real ODB into MolScript code
- GEN_O_SYMLIB
and gen_o_symm.f
Contributed by: Phil Evans
Description: generate O symmetry-operator files from the CCP4
symmop.lib file
- extract_o_log.csh
Contributed by: Gerard
Description: extract info from an "O" log file
- bindkey.macro
Contributed by: Gerard
Description: file to be source-d on SGI/XWSH/CSH in order to redefine
some keys (copy and edit)
- plot_flip_rsc.csh
Contributed by: Gerard
Description: use ODBMAN and O2D to produce plots of a pep-flip and
an RSC datablock file (including a scatter plot relating these two
properties)
- steve_new_odb.csh
Contributed by: Steven Muchmore
Description: script to set up new O directory & database file
- getpdb
Contributed by: Gerard
Description: create O macro to read and draw a PDB file and one to
kill and delete it
- het_dicts
Contributed by: Gerard
Description: generate dictionary files for a hetero compound from
the hetero.pdb collection file
- multi_het_dicts
Contributed by: Gerard
Description: same as het_dicts, but extracts all examples of
a hetero compound from structures solved at 2.0 A resolution or better
- o_sym_linker
Contributed by: Gerard
Description: link ODAT/symm files to spacegroup number
- make_o_poly_ala.f
Contributed by: Dirk Kostrewa
Description: Fortran program to generate O poly-Ala datablocks
- pdb2pdbo.sh
Contributed by: Thomas Schneider
Description: script to handle double conformations O by splitting your PDB
file into two copies
MACROS FOR GERARD'S PROGRAMS
The following are macros that can be used with some of Gerard's
programs (e.g., MAMA, MAPMAN, etc.).
- MOLEMAN2 macros
- amore_solution.momac
Contributed by: Gerard
Description: almost fool-proof way to apply an AMORE solution
- bfac_stats.momac
Contributed by: Gerard
Description: list all sorts of statistics about your B-factors and
make some plots
- make_vrml.momac
Contributed by: Gerard
Description: generates a cute VRML world (file) from any PDB file
- new_model.momac
Contributed by: Gerard
Description: go from an X-PLOR model to an O model and run quality
checks and list B-factor statistics and create some useful O macros
(e.g., to run pep-flip etc.) within a minute !
- o_to_xplor.momac
Contributed by: Gerard
Description: convert O model into PDB files suitable for X-PLOR
*and* auto-generate an X-PLOR GENERATE input file
- plane.momac
Contributed by: Gerard
Description: generates an ODL file with a
least-squares plane for a glucose residue (GLC; can be changed by
editing the file, of course).
- prot_qual.momac
Contributed by: Gerard
Description: check some quality aspects of your protein
- xplor_to_ccp4.momac
Contributed by: Gerard
Description: convert X-PLOR model into PDB file suitable for O/CCP4
- MAMA macros
- bones_mask.mamac
Contributed by: Gerard
Description: generate mask from BONES file
- cavities.mamac
Contributed by: Gerard
Description: detect cavities using Delaney's method
- extend_mask.mamac
Contributed by: Gerard
Description: extend a mask
- mask_new_cell.mamac
Contributed by: Gerard
Description: transfer a mask to a new cell etc.
- mask_new_grid.mamac
Contributed by: Gerard
Description: transfer a mask to a new grid
- mol_shapes.mamac
Contributed by: Gerard
Description: shape similarity of two aligned molecules
- pdb_mask.mamac
Contributed by: Gerard
Description: generate mask from PDB file
- cat.mamac
Contributed by: Gerard
Description: MAMA macro to produce a mask in the shape of a cat
(to show that MAMA doubles as a "CAT/CAM program" ;-)
- MAPMAN macros
- mappage10.mapmac
Contributed by: Gerard
Description: read map, make sigma 10.0, mappage for O
- DATAMAN macros
- rfree_shell.datmac
Contributed by: Gerard
Description: generate Rfree reflections in thin resolution shells
- LSQMAN macros
- ana_ncs.lsqmac
Contributed by: Gerard
Description: generate some standard plots to analyse N-fold NCS
(proteins)
FILES RELATED TO OR USING GERARD'S PROGRAMS
This is a collection of files which use or relate to some
of Gerard's programs.
- xplor_water.txt
Contributed by: Bill Weiss
Description: several files for picking potential waters with MAPMAN,
MOLEMAN and X-PLOR
- uppsala_soft.ps
Contributed by: Gerard
Description: list of Uppsala programs and what they can be used for
(not usually up-to-date !)
- MAPFIX
Contributed by: Gerard
Description: add a title to a map and/or change the symmetry
operators and spacegroup (up-to-date version distributed as
part of the RAVE package)
- average.csh
Contributed by: Gerard
Description: almost fool-proof averaging with RAVE/CCP4
- rfree.csh
Contributed by: Gerard
Description: produce PostScript plot of Rfree and Rcryst versus
progress of X-PLOR refinement
- make_sse
Contributed by: Gerard
Description: generate SSE-file for DEJAVU from PDB file
- iter_skel.csh
Contributed by: Gerard
Description: script for doing iterative skeletonisation with
RAVE/CCP4 (don't know why anyone would want to ...)
- cavity.csh
Contributed by: Gerard
Description: run VOIDOO to find cavities
- surface.csh
Contributed by: Gerard
Description: run VOIDOO to generate the solvent-accessible surface;
mappage the surface with MAPMAN
- make_rama.csh
Contributed by: Gerard
Description: run MOLEMAN to generate listing and PostScript plot of
Phi/Psi dihedral angles (Ramachandran)
- o2dps
Contributed by: Gerard
Description: quick conversion of O2D plot files into PostScript or
CricketGraph files
- domain_rave.csh
Contributed by: Gerard
Description: RAVE two-domain averaging script
- ncs_waters.csh
Contributed by: Gerard
Description: average difference map & extract possible waters
- auto_amore.com
Contributed by: Gerard
Description: automates most of the manual work in running AMORE (makes
it a lot simpler to try all 100 rotation function solutions, for one
thing !); uses PACMAN (pub/gerard/xutil)
- permute.csh
Contributed by: Igor Polikarpov
Description: find pairs of AMORE rotation function solutions which
satisfy a self-rotation function solution
- multi_lsq
Contributed by: Gerard
Description: simple alignment of multiple chains/models in one PDB file
- multi_probe
Contributed by: Gerard
Description: generate 3 probes for Mol Replacement using multiple
aligned NMR models or NCS chains
- plane_extract.csh
Contributed by: Gerard
Description: extract and plot density through a user-defined plane
- macsplit.csh
Contributed by: Gerard
Description: split SPASM macro into separate macros (one for each hit)
MISCELLANEOUS JIFFIES FOR XTALLOGRAPHERS
One of these files may do or contain just the thing you want to do.
- hetero_coord_gen.xplor
Contributed by: Gerard
Description: X-PLOR input file to generate coordinates
(starting from *random* ones) for a hetero compound, using restraints
from an appropriate topology and parameter file (981216)
- seq2comp.f
and the Irix 6 executable SEQ2COMP
Contributed by: Gerard
Description: little Fortran jiffy for SHARP users who wish to
calculate how many C, N, O and S atoms their protein contains
based on the amino-acid sequence
- rplot.pl
Contributed by: Charlie Bond
Description: perl script to produce R-factor plots from X-PLOR or
REFMAC output
- hetero.pdb
Contributed by: Gerard
Description: many many HETERO compounds extracted from the latest
PDB release and all translated to (0,0,0)
- align_many.csh
Contributed by: Gerard
Description: script to align a load of molecules to another (uses LSQMAN)
- cheap_dejavu.csh
Contributed by: Gerard
Description: script to align your model to any or all structures
in the PDB (uses the BRute_force command in LSQMAN)
- rs_rfree_zone.inp
and dsn6.csh
Contributed by: Gerard
Description: the former is an X-PLOR input file to generate systematic SA
omit maps for your whole molecule (e.g., 10 residues at a time); the latter
is a script which generates (1) a MAPMAN input file to mappage all the
systematic omit files, and (2) an O macro to go through the results (and
to calculate "real-space Rfree" values, i.e. real-space fit values inside
each residue's own omit density)
- mosaicity.awk
Contributed by: Arnold Anderson
Description: carve mosaicity tables out of a DENZO log file
- agro_log.awk
Contributed by: Arnold Anderson
Description: extract statistics from AGROVATA log file
- gsp_forms.ps
and gsp_forms.rtf
Contributed by: Gerard
Description: "GSP-forms ("Good Structure-building Practice")
- RENUM
and renum.f
Contributed by: Gerard
Description: renumber frames to 1, 2, ... in a big, concatenated DENZO
hkl-file (useful if you have overlapping frame numbers, e.g. from
different crystal orientations) - unlikely to work without modifications
with current versions of DENZO !
- ANA_DENZO
and ana_denzo.f
Contributed by: Alex Teplyakov
Description: analyse DENZO output
- ANA_SCALE
and ana_scale.f
Contributed by: Alex Teplyakov
Description: analyse SCALEPACK output
- HGEN
and hgen.f
Contributed by: Eleanor Dodson
Description: add hydrogens to a protein PDB file
- fitmat.f
Contributed by: ERNST@UTBC01
Description: subroutine to analyse 3D rotation matrix
- list_residues.csh
Contributed by: Gerard
Description: list CA records from a PDB file
- list_type.csh
Contributed by: Gerard
Description: list CA records of one residue type from a PDB file
- makemap.csh
Contributed by: Gerard
Description: (almost) fool-proof generation of O/CCP4 maps from
a model
- query_pdb.csh
Contributed by: Gerard
Description: find PDB files which contain certain keywords
- no_asterisks.csh
Contributed by: Gerard
Description: remove lines with ***asterisks*** from a whole set of
DENZO output files; you MUST COPY AND EDIT this script !
- whichpdb
Contributed by: Gerard
Description: list info about PDB files (uses *.idx files)
- pickwater.csh
Contributed by: Gerard
Description: pick potential waters for O in CCP4 difference map
- denzan
Contributed by: Gerard
Description: analyse DENZO log files
- freq.csh
Contributed by: Gerard
Description: calculate frequency of spacegroups in the PDB
- brute.awk
Contributed by: Gerard
Description: for desperate molecular replacers; takes AMORE rot-fun
solutions and expands each solution into 27 new ones with ALPHA, BETA,
GAMMA offset by -2, 0 and +2 degrees
- rshow.csh
Contributed by: Charlie Bond
Description: use gnuplot to show R and Rfree from an X-PLOR run
- rplot.csh
Contributed by: Charlie Bond
Description: use gnuplot to make PostScript plot of R and Rfree from an
X-PLOR run
- ncssgs.txt
Contributed by: Jim Clifton
Description: a file containing a Fortran/C program and instructions
that creates an artifical space group that is the combination of
crystallographic SG operators and NCS operators. Read in your protomer,
during "sym_setup" tell O to use the artificial space group, and
"sym_object" (or "sym_sphere") does all the rest: Any changes to
the protomer show up in the symmetry objects, too.
UNIX AND OTHER JIFFIES
One of these files may do or contain just the thing you want to do.
- mvmany.csh
Contributed by: Gerard
Description: rename a whole bunch of files in one go; you MUST COPY
AND EDIT this script !
- forall
Contributed by: Gerard
Description: execute a Unix command for a number of files, e.g.:
forall '*.ps' lpr -Pqms or: forall '*.log *.out' tail -20
- dirtar
Contributed by: Gerard
Description: tar and compress a directory tree, e.g. prior to ftp-ing
- tardir
Contributed by: Gerard
Description: uncompress and "un-tar" a directory which was tarred and
compressed with "dirtar"
- daily
Contributed by: Gerard
Description: daily backup of changed files to another disk
- file_to_locase.csh
Contributed by: Gerard
Description: change UPPERCASE filenames to lowercase
- edit.ps
Contributed by: Gerard
Description: copy onto overhead sheet and use when adding/moving
labels to/in a PostScript file
- combine_ps
Contributed by: Kay Diederichs
Description: combine N O2D PostScript files on one page
- Mosaic_for_beginners.ps
Contributed by: Arnold Anderson
Description: introduction to Mosaic
- EMPTY
Contributed by: Gerard
Description: remove empty lines from an ASCII file; use:
EMPTY < infile > outfile
- PRETTY
Contributed by: Gerard
Description: replace multiple spaces by one space in a text file
(e.g., X-PLOR HKL files ...); use: PRETTY < infile > outfile, or:
EMPTY < infile | PRETTY > outfile
- UPCASE
Contributed by: Gerard
Description: convert a file to UPPERcase; use: UPCASE < infile > outfile
- LOCASE
Contributed by: Gerard
Description: convert a file to lowercase; use: LOCASE < infile > outfile
Latest update at 15 March, 1998.
