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Next: About this document ... Up: FIT2D V12.012 Reference Manual V6.0   ESRF98HA01T Previous: Appendix G: Collaborative Development


Index

FIT GRID PEAKS
 FIT GRID PEAKS
1-D
Fitting
Peak
The MFIT (MULTIPLE 1-D
1-D Interpolation
  1-D INTERPOLATION
2-D Data
Integrate
The INTEGRATE Command
2-D Polynomial
Fit
 SURFACE POLYNOMIAL
3-D
Surface Plot
  3-D SURFACE PLOT
3CAM
Data Format
 3CAM
CALIBRATION
Calibration Sub-menu
CALCULATE DISTORTION FUNCTION
 CALCULATE DISTORTION FUNCTION
DECAY CORRECTION
 DECAY CORRECTION
DESTROY GRID PEAKS
 DESTROY GRID PEAKS
DISPLAY DISTORTION
 DISPLAY DISTORTION
FAST CORRECTION
 FAST CORRECTION
FIND PEAKS
 FIND PEAKS
FLAT-FIELD CORRECTION
 FLAT-FIELD CORRECTION
spec
 FLAT-FIELD CORRECTION
INPUT SPATIAL FUNCTION
 INPUT SPATIAL FUNCTION
INVERSE DISTORTED/IDEAL
 INVERSE DISTORTED/IDEAL
MADNES
 INVERSE DISTORTED/IDEAL
LEARN HOLE PROFILE
 LEARN HOLE PROFILE
LINEARISE INTENSITIES
 LINEARISE INTENSITIES
LOAD LOOK-UP TABLE
 LOAD LOOK-UP TABLE
LOOK-UP TABLE (SPATIAL DISTORTION)
 LOOK-UP TABLE (SPATIAL DISTORTION)
OUTPUT SPATIAL FUNCTION
 OUTPUT SPATIAL FUNCTION
PLATYPUS CALIBRATION FILE
 PLATYPUS CORRECTION FILE
PLATYPUS
 PLATYPUS CORRECTION FILE
RE-CALCULATE DISTORTION
 RE-CALCULATE DISTORTION
SAVE PEAKS
 SAVE PEAKS
SIZE (IMAGE DISPLAY)
 SIZE (IMAGE DISPLAY)
FIND PEAKS
Image Region
 SIZE (IMAGE DISPLAY)
SPATIAL CORRECTION
 SPATIAL CORRECTION
STORE LOOK-UP TABLE
 STORE LOOK-UP TABLE
TRANSFER DISTORTION
 TRANSFER DISTORTION
VIEW PEAKS
 VIEW PEAKS
MADNES
Spatial Distortion
Correction
 Spatial Distortion Correction in
lodspd
 Spatial Distortion Correction in
pxtomm
 Spatial Distortion Correction in
mmtopx
 Spatial Distortion Correction in
FIT
Fit Sub-Menu
CHANGE SCALE
 CHANGE SCALE
COVARIANCE
 COVARIANCE
DEFINE MASK
 DEFINE MASK
DISPLAY MASK
 DISPLAY MASK
MINIMISE
 MINIMISE
NORMALISATION
 NORMALISATION
OUTPUT PARAMETERS
 OUTPUT PARAMETERS
POWDER DIFFRACTION
 POWDER DIFFRACTION
R/THETA RE-BINNING
 R/THETA RE-BINNING
RADIAL PROFILE
 RADIAL PROFILE
PUBLICATION QUALITY
Publication Quality Graphs
Xdisplayf
Colour Map Usage
<CONTROL-C>
Graphics Output File Does
FIT2D
Citation
Acknowledgement and Citation of
FIT2D
Citation
Acknowledgement and Citation of
gmake
Acknowledgements
emacs
Acknowledgements
LATEX $2_{\varepsilon }$
Documents
Including Graphics in LATEX
FIT2D
Availability
Appendix A: FIT2D Availability
START MACRO
Appendix B: FIT2D Macro
STOP MACRO
Appendix B: FIT2D Macro
RUN MACRO
Appendix B: FIT2D Macro
MACRO
Appendix B: FIT2D Macro
SEQUENCE
Appendix B: FIT2D Macro
UN-DEFINE VARIABLE
Variables
EXCHANGE
The GUI EXCHANGE Command
IMAGE
Command
The GUI MOVEMENT Command
FIT2D
FIT2D V12.012 Reference Manual V6.0   ESRF98HA01T
MFIT
The MFIT (MULTIPLE 1-D
FIT2D
Executables
Availability
Prerequisites
FIT2D
Home Page
URL
Prerequisites
DISPLAY
Prerequisites
##BLANK
FIT2D Prompts and Required
<TAB>
File Name
Completion
FIT2D Prompts and Required
FIT2D
Screen Output
FIT2D Terminal Output
FIT2D
Terminal Output
FIT2D Terminal Output
FIT2D
Version Number
FIT2D Terminal Output
INFO:
FIT2D Terminal Output
WARNING:
FIT2D Terminal Output
ERROR:
FIT2D Terminal Output
HELP
On-line HELP
TITLE
Modifying Text
X-AXIS LABEL
Modifying Text
Y-AXIS LABEL
Modifying Text
Z-AXIS LABEL
Modifying Text
FIT2D
Start-up
Start-up of FIT2D
1-D INTERPOLATION
  1-D INTERPOLATION
3-D SURFACE PLOT
  3-D SURFACE PLOT
?
  ?
ADD
  ADD
ANNOTATION LABEL
  ANNOTATION LABEL
ASPECT RATIO
  ASPECT RATIO
AUTOCORRELATION
  AUTOCORRELATION
AXES SCALES
  AXES SCALES
BANNER
  BANNER
FIT2D
Banner Page
Print
  BANNER
BLUR
  BLUR
BRAGGS' EQUATION
  BRAGGS' EQUATION
D-SPACING
  BRAGGS' EQUATION
TWO THETA ANGLE
  BRAGGS' EQUATION
WAVELENGTH/ENERGY
  BRAGGS' EQUATION
CADD
  CADD (Constant ADDition)
CALCULATOR
  CALCULATOR
VARIABLE
  CALCULATOR
CALIBRATION
  CALIBRATION
CDIVIDE
  CDIVIDE (Constant DIVIDE)
CHANGES
  CHANGES
FIT2D
Versions
  CHANGES
FIT2D
Changes
  CHANGES
CLEAR DATA
  CLEAR DATA
CLOSE LOG
  CLOSE LOG
CMULTIPLY
  CMULTIPLY (Constant MULTIPLY)
COLOUR TABLE
  COLOUR TABLE
CONCATENATION
  CONCATENATION
CONTOUR PLOT
  CONTOUR PLOT
CREATE DATA
  CREATE DATA
CURVE STYLES
  CURVE STYLES
DEDUCE FILE SEQUENCE
  DEDUCE FILE SEQUENCE
DEFINE VARIABLE
  DEFINE VARIABLE
DIMENSIONS
  DIMENSIONS
DISPLAY LIMITS
  DISPLAY LIMITS
DIVIDE
  DIVIDE
END GRAPHICS FILE
  END GRAPHICS FILE
ENTROPY
  ENTROPY
EXCHANGE
  EXCHANGE
EXIT
  EXIT
FAST IMAGE
  FAST IMAGE
FILTER
  FILTER
FIT
  FIT
FLIP
  FLIP
FONT
  FONT
FUJI LINEARISATION
  FUJI LINEARISATION
FULL REGION
  FULL REGION
GAUSSIAN
  GAUSSIAN
GEOMETRY (EXPERIMENT)
  GEOMETRY (EXPERIMENT)
GRID
  GRID
GUI
  GUI
HELP
  HELP
HISTOGRAM
  HISTOGRAM
I2C
  I2C
IMAGE
  IMAGE
INFORMATION
  INFORMATION
INPUT DATA
  INPUT DATA
BINARY (UNFORMATTED)
 BINARY (UNFORMATTED)
BSL FORMAT
 BSL FORMAT
CHIPLOT FORMAT
 CHIPLOT FORMAT
FUJI BAS-2000
 FUJI BAS-2000
GAS 2-D DETECTOR (ESRF)
 GAS 2-D DETECTOR (ESRF)
HAMAMATSU PHOTONICS
 HAMAMATSU PHOTONICS
IMAGEQUANT
 IMAGEQUANT
MAR RESEARCH FORMAT
 MAR RESEARCH FORMAT /
NEW MAR CODE
 MAR RESEARCH FORMAT /
PMC FORMAT
 PMC FORMAT
pmi2pmc
 PMC FORMAT
PRINCETON CCD FORMAT
 PRINCETON CCD FORMAT
TIFF
 TIFF
UNKNOWN
Data Format
 UNKNOWN
USER INTENSITIES
 USER INTENSITIES
INTERNAL MEMORY
  INTERNAL MEMORY
LINEARISE FILM
  LINEARISE FILM
LIST VARIABLES
  LIST VARIABLES
LOGARITHM
  LOGARITHM
MACRO
  MACRO
MEDIAN FILTER
  MEDIAN FILTER
MESSAGE
  MESSAGE
MOVE/ROTATE
  MOVE/ROTATE
MULTIPLY
  MULTIPLY
NORMALISE
  NORMALISE
OFFSET/SCALE
  OFFSET/SCALE
OPEN LOG
  OPEN LOG
OUTPUT DATA
  OUTPUT DATA
FIT2D
New Versions
FIT2D Old and New
BINARY (UNFORMATTED)
 BINARY (UNFORMATTED)
FIT2D
Old Version
FIT2D Old and New
MOSFLM
 BINARY (UNFORMATTED)
DENZO
 BINARY (UNFORMATTED)
INTLAUE
 BINARY (UNFORMATTED)
IDL
 BINARY (UNFORMATTED)
fit2d_old
FIT2D Old and New
NO HEADER FILES
 BINARY (UNFORMATTED)
HEADER FILES
 BINARY (UNFORMATTED)
BSL FORMAT
 BSL FORMAT
CBF
 CBF
CHIPLOT
Output
File Format
 CHIPLOT
fit2d_new
FIT2D Old and New
DENZO MAR FORMAT
 DENZO MAR FORMAT
PAGE POSITION
  PAGE POSITION
PEEP
  PEEP
PIXEL REGION
  PIXEL REGION
ROI
Change
  PIXEL REGION
PLOT DATA
  PLOT DATA
POISSONIAN NOISE
  POISSONIAN NOISE
POLARISATION EFFECT
  POLARISATION EFFECT
POSTSCRIPT OPTIONS
  POSTSCRIPT OPTIONS
POWER SPECTRUM
  POWER SPECTRUM
PREDICTOR
  PREDICTOR
PRINT GRAPHICS
  PRINT GRAPHICS
PUBLICATION QUALITY
  PUBLICATION QUALITY
QUESTION
  QUESTION
QUIT
  QUIT
RAISE TO A POWER
  RAISE TO A POWER
REBIN
  REBIN
RE-BIN
  RE-BIN
RECALL
  RECALL
REFLECT
  REFLECT
REGION
  REGION
RING (ADD POWDER RING)
  RING (ADD POWDER RING)
ROI
  ROI (Region Of Interest)
ROI
Change
  ROI (Region Of Interest)
ROTATE LUT
  ROTATE LUT
RUN MACRO
  RUN MACRO
SELECT PIXEL OPERATION
  SELECT PIXEL OPERATION
SEQUENCE
  SEQUENCE
SET ANNOTATION STYLE
  SET ANNOTATION STYLE
SET ARROW STYLE
  SET ARROW STYLE
SET AXES STYLE
  SET AXES STYLE
SET BACKGROUND STYLE
  SET BACKGROUND STYLE
SET COLOUR
  SET COLOUR
SET CURVE STYLES
  SET CURVE STYLES
SET ENUMERATION STYLE
  SET ENUMERATION STYLE
SET FONT
  SET FONT
SET GRID STYLE
  SET GRID STYLE
SET LAYOUT STYLE
  SET LAYOUT STYLE
SET TICK POSITIONS
  SET TICK POSITIONS
SET TITLE STYLE
  SET TITLE STYLE
SET X-LABEL STYLE
  SET X-LABEL STYLE
SET Y-LABEL STYLE
  SET Y-LABEL STYLE
SLEEP
  SLEEP
SMOOTH
  SMOOTH
SPATIAL FILTERING
  SPATIAL FILTERING
START MACRO
  START MACRO
STATISTICS
  STATISTICS
STOP MACRO
  STOP MACRO
STORE
  STORE
SUBTRACT
  SUBTRACT
SURFACE INTERPOLATION
  SURFACE INTERPOLATION
SYMBOL
  SYMBOL
SYMMETRIC FUNCTION
  SYMMETRIC FUNCTION
TITLE
  TITLE
THRESHOLD
  THRESHOLD
TRANSPOSE
  TRANSPOSE
UN-DEFINE VARIABLE
  UN-DEFINE VARIABLE
UNIT CELL PARAMETERS
  UNIT CELL PARAMETERS
VARIABLE
  VARIABLE
VARIANCES DEFINITION
  VARIANCES DEFINITION
V2C
  V2C
WAIT
  WAIT
WEIGHTED AVERAGE
  WEIGHTED AVERAGE
X-AXIS LABEL
  X-AXIS LABEL
Y-AXIS LABEL
  Y-AXIS LABEL
Z-AXIS LABEL
  Z-AXIS LABEL
Z-SCALE
  Z-SCALE
INFO
Messages
Information, Warnings, and Error
ROI
Full Data
  FULL REGION
NOTE
Messages
Information, Warnings, and Error
WARNING
Messages
Information, Warnings, and Error
ERROR
Messages
Information, Warnings, and Error
ROI
  REGION
ADR
``Region of Interest'' (ROI)
ROI
``Region of Interest'' (ROI)
$2\theta$ Angle
Calculate
  BRAGGS' EQUATION
PAUSE
  PAUSE
?
FIT2D Prompts and Required |   ?
``C''-shell
Command Files (Scripts) for
``ESRF Data Format''
Problem
 ``ESRF Data Format''
``Memory''
Array
The ``MEMORY''
A4
Landscape
``Landscape'' Output
Acknowledgement
FIT2D
Usage
Acknowledgement and Citation of
Active Data Region
``Region of Interest'' (ROI)
Add
Data
  ADD
Images
  ADD
Addition
Constant
  CADD (Constant ADDition)
Images
The MATHS Sub-Menu
Scalar
Image
The MATHS Sub-Menu
Alignment
Images
  MOVE/ROTATE
Allocation
Virtual Memory
Dynamic Memory Allocation
Ambiguous
Prompts
Reporting Bugs, Bad Features,
Angle
$2\theta$
  BRAGGS' EQUATION
Annotation
  ANNOTATION LABEL
Attributes
  SET ANNOTATION STYLE
Style
  SET ANNOTATION STYLE
Annulus
Masking
The GUI MASK Command
Arc
Masking
The GUI MASK Command
Arithmetic
Image
The MATHS Sub-Menu
Operations
Important Main Menu Commands
Array
Current Data
The ``MEMORY''
Memory
Graphics User Interface (GUI) | The ``MEMORY''
Storage
Internal
  INTERNAL MEMORY
Transpose
  TRANSPOSE
Arrays
Error Estimate
Dynamic Memory Allocation
Program
Dynamic Memory Allocation
Variance
Graphics User Interface (GUI) | Dynamic Memory Allocation
Array Sizes
Specifying
Program Dimensions
Arrow
Attributes
  SET ARROW STYLE
Style
  SET ARROW STYLE
ASCII
Header Files
 BINARY (UNFORMATTED)
Output
 CHIPLOT |  SPREAD SHEET
Aspect Ratio
Images
  ASPECT RATIO
Set
The GUI OPTIONS Command
Autocorrelation
Function
  AUTOCORRELATION
Automatic
Completion
File Name
FIT2D Prompts and Required
Sequence
Processing
  SEQUENCE
Sequence Processing
The MACROS / LOG | Creation and Using Simple
Availability
FIT2D
Appendix A: FIT2D Availability
Average
  STATISTICS
Images
The FILE SERIES Interface
Average.File Series
The FILE SERIES Interface
Averaging
Images
  WEIGHTED AVERAGE
Axes
Attributes
  SET AXES STYLE
Enumeration
Style
  SET ENUMERATION STYLE
Scaling
Set
  AXES SCALES
Style
  SET AXES STYLE |   SET ENUMERATION STYLE
Ticks
Positions
  SET TICK POSITIONS
Axis
Colour
  SET COLOUR
Scaling
Set
  AXES SCALES
Azimuth
Integration
The CAKE Command
Background
Colour
  SET BACKGROUND STYLE
Backing Store
None
The Graphics is not
Bad
Documentation
Limitations, Bugs, and Unclear | Reporting Bugs, Bad Features,
Bad Data
Masking
The GUI MASK Command
Banner
Text
FIT2D Terminal Output
Banner Page
Output
  BANNER
BAS-1500
Fuji
Data Format
 FUJI BAS-2000
BAS-2000
Fuji
Data Format
 FUJI BAS-2000
Base 10
Logarithm
  LOGARITHM
Batch
Mode
Macro File
Processing
Command Line Options | Macro File | No Graphics
Batch Mode
Unix
Script
Command Files (Scripts) for
Beam-stop
 SIZE (IMAGE DISPLAY)
Beam Centre
Calibration
The CALIBRANT Command
Determined
The BEAM CENTRE Command
Beam Line
Calibration
The CALIBRANT Command
Beer
Free
Reporting Bugs, Bad Features,
Big Endian
Integer
Output
 BINARY (UNFORMATTED)
Binary
Data
 BINARY (UNFORMATTED)
File
Output
 BINARY (UNFORMATTED)
File Format
Output
 BINARY (UNFORMATTED)
Output
Information
 BINARY (UNFORMATTED)
Blank
Input
FIT2D Prompts and Required
Blur
Top-Hat
The FILTER Sub-Menu
Blurring
  BLUR
Images
The FILTER Sub-Menu
Bourgeois
Dominique
The Graphics is not
Bragg
Equation
  BRAGGS' EQUATION
Bragg Intensities
Polarisation Effect
  POLARISATION EFFECT
BSL Format
Output
 BSL FORMAT
Bug
Reporting
Reporting Bugs, Bad Features,
Bugs
FIT2D Old and New | Limitations, Bugs, and Unclear
Known
Known Bugs and Limitations
Byte
Input
Data
 BINARY (UNFORMATTED) |  BINARY (UNFORMATTED)
Byte swapping
The GUI INPUT Command
C-shell
Command Files (Scripts) for
Cake
Integration
The CAKE Command
Calculate
Statistics
Image
The MATHS Sub-Menu
Calculator
  CALCULATOR
Calibrant
Command
The CALIBRANT Command
Calibrate
Grid
 FIT GRID PEAKS
Calibration
Calibration Sub-menu
Beam Centre
The CALIBRANT Command
Beam Line
The CALIBRANT Command
Dead-Time
Detector
 FLAT-FIELD CORRECTION
Flat-Field
 FLAT-FIELD CORRECTION
Help
 ?
Measurement
Spatial Distortion
Defining a Spatial Distortion
User Defined
The CALIBRANT Command
Calibration Sub-Menu
Commands
Effects
Appendix D: Command Output
Campbell
John
 BINARY (UNFORMATTED)
CBF
Data Format
 CBF
CCD Camera
Hamamatsu Photonics
 HAMAMATSU PHOTONICS
CCD Camera
Photometrics
 PMC FORMAT
Princeton
 PRINCETON CCD FORMAT
Changes
FIT2D
  CHANGES
Changing
Title
Style
  SET TITLE STYLE
X-axis Label
Style
  SET X-LABEL STYLE
Y-axis Label
Style
  SET Y-LABEL STYLE
Chebyshev Polynomial
 SURFACE POLYNOMIAL
Chiplot
Data Format
 CHIPLOT FORMAT
Output
Format
 CHIPLOT
Choice
Font
  SET FONT
Choices
Colour Table
The GUI OPTIONS Command
Circle
Masking
The GUI MASK Command
Circular
Symmetric
Function
  SYMMETRIC FUNCTION
Circular Average
(Radial Profile)
 RADIAL PROFILE
Citation
Distortion Calibration
Acknowledgement and Citation of
Fluorescent Glasses
Acknowledgement and Citation of
General
Acknowledgement and Citation of
MFIT
Acknowledgement and Citation of
Clear
Mask
 CLEAR MASK
Close
Graphics File
  END GRAPHICS FILE
Macro
The MACROS / LOG |   STOP MACRO
Coding
Colour
GUI
Graphics User Interface Colour
Colour
Background
  SET BACKGROUND STYLE
Coding
GUI
Graphics User Interface Colour
Flash
Colour Map Usage
Indices
Usage
Colour Map Usage
Lines
  SET COLOUR
Mask Elements
Set
 SET MASK COLOUR
Text
  SET COLOUR
Usage
Colour Map Usage
Colour Bar
Intensity Scale
Z Scaling
The GUI Z SCALING
Colour Flash
Colour Map Usage
Colour Mapping
24-bit
X-11 Restrictions
TrueColor
X-11 Restrictions
Colour Table
Choices
The GUI OPTIONS Command
Control
Colour Table Control
Indices
Colour Table Control
Rotate
The GUI OPTIONS Command
Rotation
  ROTATE LUT
Combining
Images
  WEIGHTED AVERAGE
Command
Editing
FIT2D Prompts and Required
Input
FIT2D Prompts and Required
Logic
Appendix D: Command Output
Operating System
FIT2D Prompts and Required
Output
Position
Appendix D: Command Output
Command-line
Mode
Using FIT2D in ``Command-line''
Commands
Important Main Menu Commands
Calibration Sub-Menu
Effects
Appendix D: Command Output
Fit Sub-Menu
Effects
Appendix D: Command Output
Macros
``KEYBOARD'' Interface Commands for
Main Menu
Important Main Menu Commands | The KEYBOARD INTERFACE: Command
Menu Menu
Effects
Appendix D: Command Output | Appendix D: Command Output | Appendix D: Command Output
Command File
Batch Processing
Command Files (Scripts) for
Command Line
Options
Command Line Options
Recall
FIT2D Prompts and Required
Variable
Definition
Variable Definition
Complete
ROI
  FULL REGION
Completion
File Name
FIT2D Prompts and Required
Complex Arithmetic Calculator
  CALCULATOR
Complicated
Macros
More Complicated Macros
Composite
Image
The FILE SERIES Interface
Compressed Diffraction Data
 COMPRESSED DIFFRACTION DATA
Compression
Data
  PREDICTOR
Entropy
  ENTROPY
Concatenation
Strings
  CONCATENATION
Conditions
Usage
Appendix E: Conditions of
Constant
Addition
  CADD (Constant ADDition)
Division
  CDIVIDE (Constant DIVIDE)
Multiplication
  CMULTIPLY (Constant MULTIPLY)
Constraints
Fit
 CONSTRAIN PARAMETERS
Contaminated Regions
Masking
The GUI MASK Command
Control
Colour Table
Colour Table Control
Control-C
Problem
Graphics Output File Does | Graphics Output File Does
Conversion
Real Space
Reciprocal Space
  UNIT CELL PARAMETERS
Reciprocal Space
Real Space
  UNIT CELL PARAMETERS
Convert
Integer Value
Character
  I2C
Photon Energy
Wavelength
  CALCULATOR | Examples of Calculator Usage
Wavelength
Photon Energy
  CALCULATOR
Convolution
Top-Hat
The FILTER Sub-Menu |   BLUR |   SMOOTH
Coordinate
Input
Graphical Input
Coordinates
Data
Coordinate Systems
Page
Coordinate Systems
Coordinate Systems
Coordinate Systems
Correct
Spatial Distortion
 SPATIAL CORRECTION
Correction
Flat-Field
 NORMALISATION
Lorentz
 POWDER DIFFRACTION
Polarisation
Correction for Polarisation Effects
Spatial Distortion
Fast
 FAST CORRECTION
Correlation
Function
  AUTOCORRELATION
Cosine
Function
Fitting
Entering an Initial Model
Counting Statistics
Scaling
  VARIANCES DEFINITION
Create
Log File
The MACROS / LOG
Look-up Table
Correction
 LOOK-UP TABLE (SPATIAL DISTORTION)
Current Data
Array
The ``MEMORY''
Variances
Swap
  V2C
Current Data¡`Memory''
Exchange
The GUI EXCHANGE Command
Current Variables
List
  LIST VARIABLES
Curve
Styles
Change
  SET CURVE STYLES
Curve Styles
The GUI OPTIONS Command
Customisation
Graphics
  PAGE POSITION
D-spacing
Calculate
  BRAGGS' EQUATION
d-spacings
  PEEP
Data
Binary
Input
 BINARY (UNFORMATTED)
Display
False Colour Image Display
Input
The GUI INPUT Command |   INPUT DATA
Masking
The GUI MASK Command
Minimum/Maximum
  THRESHOLD
Output
  OUTPUT DATA
Re-binning
  REBIN |   RE-BIN
Smoothing
  SMOOTH
Store
  INTERNAL MEMORY
Thresholding
  THRESHOLD
Data Compression
Entropy
Calculation
  ENTROPY
Data Analysis
Protein Crystallography
DENZO
 BINARY (UNFORMATTED)
MOSFLM
 BINARY (UNFORMATTED)
Data Compression
  PREDICTOR
Data Coordinates
Coordinate Systems
Data Format
3CAM
 3CAM
CBF
 CBF
ESRF
 ``ESRF Data Format''
Unknown
 UNKNOWN
Data Mask
The GUI MASK Command |  The Data Mask
Definition
 THRESHOLD MASKING
Save
 TRANSFER MASK TO MEMORY
Data Masking
Menu
The GUI MASK Command
Data Region
Extend
The GEOMETRIC Sub-Menu
Data Values
Interactive
Input
 USER INTENSITIES
Data Window
``Region of Interest'' (ROI) | ``Region of Interest'' (ROI) |   REGION
DDR
Coordinate Systems
Dead-Time
Calibration
 FLAT-FIELD CORRECTION
Correction
 FLAT-FIELD CORRECTION
Decay
Exponential
Function
Entering an Initial Model
Imaging Plate
Intensity
 DECAY CORRECTION
Deduce
File Sequences
  DEDUCE FILE SEQUENCE
Default
Input
Values
FIT2D Prompts and Required
Define
Data Mask
 THRESHOLD MASKING
Masked Elements
 DEFINE MASK
Variable
  DEFINE VARIABLE
Command Line
Variable Definition
Definition
Distortion Function
Ideal/Distorted
 INVERSE DISTORTED/IDEAL
Tilt Angles
Definition of the Tilt
DENZO
 BINARY (UNFORMATTED) | Colour Map Usage
Destroy
Variable
  UN-DEFINE VARIABLE
Detector
Dead-Time
Calibration
 FLAT-FIELD CORRECTION
Correction
 FLAT-FIELD CORRECTION
Detector Tilt
Calibration
The CALIBRANT Command
Fit
The TILT Command |  TILT/BEAM CENTRE
Determine
Beam Centre
The TILT Command |  TILT/BEAM CENTRE
Development Versions
FIT2D
FIT2D Old and New
Deviatoric Stress
The CAKE Command
Dierckx
Paul
Acknowledgements
Diffraction
Powder
The TILT Command |  PLATYPUS CORRECTION FILE | Fit Sub-Menu |  Powder Diffraction Ring Integration |  POWDER DIFFRACTION |  TILT/BEAM CENTRE
DIP-2000
(Mac Science)
 DIP-2000 (Mac Science)
Disable
Header File
Output
 BINARY (UNFORMATTED)
Display
Data
False Colour Image Display
Image
False Colour Image Display
Results
 RESULTS
Distance
Measurement
The GUI DISPLAY Command
Distortion
Fit
Residuals
 RESIDUALS OF FIT
Processing
 TRANSFER DISTORTION
Distortion Calibration
Citation
Acknowledgement and Citation of
Distortion Function
Definition
Ideal/Distorted
 INVERSE DISTORTED/IDEAL
Distortion Spline
 CALCULATE DISTORTION FUNCTION
Division
  DIVIDE
Constant
  CDIVIDE (Constant DIVIDE)
Image
Example
Example of Dividing One
Images
The MATHS Sub-Menu
Scalar
Image
The MATHS Sub-Menu
Document
LATEX $2_{\varepsilon }$
Including Graphics in LATEX
Diagrams
Including Graphics in LATEX
Graphics
Including Graphics in LATEX
Documentation
Bad
Limitations, Bugs, and Unclear | Reporting Bugs, Bad Features,
Production
Graphical Form and Menu
Drum-Scanner
EMBL
 TIFF
Dump (Binary)
File
Output
 BINARY (UNFORMATTED)
Dynamic
Linked
Version
Prerequisites
Dynamic Memory
Dynamic Memory Allocation
Effects
Calibration Sub-Menu Commands
Appendix D: Command Output
Fit Sub-Menu Commands
Appendix D: Command Output
Main Menu Commands
Appendix D: Command Output | Appendix D: Command Output | Appendix D: Command Output
EMBL
Drum Scanner
 TIFF
Empty String
Input
FIT2D Prompts and Required
Enable
Header File
Output
 BINARY (UNFORMATTED)
Endian
Big/Little
Output
 BINARY (UNFORMATTED)
Little/Big
Output
 BINARY (UNFORMATTED)
Energy
Wavelength
Conversion
  CALCULATOR | Examples of Calculator Usage
Entropy
Calculate
  ENTROPY
Zeroth Order
  ENTROPY
Enumeration
Style
  SET ENUMERATION STYLE
Environment
Variables
Prerequisites
Equation
Bragg
  BRAGGS' EQUATION
Error
Memory Allocation
Failed
``Keyboard'' Interface Start-Up
Messages
FIT2D Start-up | Information, Warnings, and Error | Information, Warnings, and Error | FIT2D Terminal Output
ERROR:
FIT2D Terminal Output
Error Analysis
Graphics User Interface (GUI)
Error Bar
Styles
  SET CURVE STYLES
Error Estimate
Arrays
Dynamic Memory Allocation
Error Propagation
Graphics User Interface (GUI)
Escape
Input
FIT2D Prompts and Required
ESRF
Data Format
 ``ESRF Data Format''
Example
Header File
 BINARY (UNFORMATTED)
Image
Division
Example of Dividing One
Macro
A Macro Example
Subtraction
Images
Example of Dividing One
Variable
Definition
A Macro Example
Examples
SEQUENCE Command
Examples of the SEQUENCE
File Sequence
Processing
Examples of the SEQUENCE
Exchange
Current Data¡`Memory''
The GUI EXCHANGE Command
Variances/Current Data
  V2C
Executables
Availability
Prerequisites
Exit
  EXIT
Experimental
Geometry
  GEOMETRY (EXPERIMENT)
Explanation
Prompts
FIT2D Prompts and Required
Exponential
Decay
Function
Entering an Initial Model
Exponention
Images
The MATHS Sub-Menu
Extend
Data Region
The GEOMETRIC Sub-Menu
False Colour
Image
  PLOT DATA
Display
False Colour Image Display
Look-up Table
  COLOUR TABLE
False Colour Image
Intensity
Scaling
The GUI Z SCALING
Features
Bad
Reporting Bugs, Bad Features,
Feed-back
Reporting Bugs, Bad Features,
Figures
Document
Including Graphics in LATEX
File
Input
The GUI INPUT Command
Output
The GUI OUTPUT Command |   OUTPUT DATA
Save
The GUI OUTPUT Command
Sequence
Defining a File Series
Unformatted
Output
 BINARY (UNFORMATTED)
File Sequences
Deduction
  DEDUCE FILE SEQUENCE
Files
Sequences
  SEQUENCE
File Format
Binary
Output
 BINARY (UNFORMATTED)
ESRF Gas-filled Detectors
 GAS 2-D DETECTOR (ESRF)
Fuji
BAS-2000
 FUJI BAS-2000
MarResearch
 BINARY (UNFORMATTED)
MCA
Output
 MCA FORMAT
Output
Spread Sheet
 SPREAD SHEET
TIFF
 TIFF INTEGERS
Spread Sheet
Output
 SPREAD SHEET
TIFF
Output
 TIFF INTEGERS
Unknown
The GUI INPUT Command
File Name
Completion
FIT2D Prompts and Required
File Sequence
  SEQUENCE
Processing
Command Line Options
Re-number
Examples of the SEQUENCE
File Sequences
Processing
  SEQUENCE
File Series
The FILE SERIES Interface | Defining a File Series
Integrate
Integrating a Series of
Integration
The FILE SERIES Interface
Film Data
Linearisation
  LINEARISE FILM
Filter
The FILTER Sub-Menu
High-Pass
  SPATIAL FILTERING
Low-Pass
The FILTER Sub-Menu |   SPATIAL FILTERING
Median
The FILTER Sub-Menu |   MEDIAN FILTER
Noise
The FILTER Sub-Menu | The FILTER Sub-Menu
Non-Linear
The FILTER Sub-Menu
Spatial
  SPATIAL FILTERING
Filtering
Fourier
  FILTER
Non-Linear
The FILTER Sub-Menu
Operations
Important Main Menu Commands
Find
Grid Peaks
 FIT GRID PEAKS
Fit
Fit Sub-Menu
2-D Polynomial
 SURFACE POLYNOMIAL
Beam Centre
The TILT Command |  TILT/BEAM CENTRE
Constraints
 CONSTRAIN PARAMETERS
Control
Parameters
 SET UP
Minimisation
 MINIMISE
Parameter
Scale Size
 CHANGE SCALE
Parameters
Input
 INPUT PARAMETERS
Residuals
Fit Sub-Menu
Results
Display
 RESULTS
fit2d
Citation
Acknowledgement and Citation of
File Format
Output
 FIT2D STANDARD FORMAT
Reference
Usage
Acknowledgement and Citation of
Start-up
Start-up of FIT2D | Start-up of FIT2D
Usage
Citation
Acknowledgement and Citation of
FIT2D.Icon.Create
Creating a FIT2D Icon
Fitch
Andy
 POWDER DIFFRACTION
FITPACK
Acknowledgements
Fitting
1-D
Multiple
The MFIT (MULTIPLE 1-D
Initialisation
1-D
Entering an Initial Model
Model
  FIT | Fit Sub-Menu
Surfaces
Acknowledgements
Fit Parameter
Output
 OUTPUT PARAMETERS
Fit Sub-Menu
Commands
Effects
Appendix D: Command Output
Flat-Field
Non-Uniformity of Sensitivity Response
Correction
Non-Uniformity of Sensitivity Response |  FLAT-FIELD CORRECTION |  NORMALISATION
Flip
  FLIP
Image
The GEOMETRIC Sub-Menu
Flood-Field
Non-Uniformity of Sensitivity Response
Fluorescent Cells
Non-Uniformity of Sensitivity Response
Fluorescent Glasses
Citation
Acknowledgement and Citation of
Font
Choice
  SET FONT
Missing
Missing Font Message at
Fonts
Fonts for Text Output
Forms
Graphical
Graphical forms
Fourier
Filtering
  FILTER
Free
Beer
Reporting Bugs, Bad Features,
Free Software Foundation
Acknowledgements
Frequency Histogram
Pixel Values
  HISTOGRAM
Fuji
BAS-2000
Format
 FUJI BAS-2000
Image Plate Data
Linearisation
  FUJI LINEARISATION
Imaging Plates
Intensity Decay
 DECAY CORRECTION
Function
Decay
Exponential
Entering an Initial Model
Exponential
Decay
Entering an Initial Model
Gaussian
  GAUSSIAN
Fitting
Entering an Initial Model
Lorentzian
Fitting
Entering an Initial Model
Polynomial
Fitting
Entering an Initial Model
Sinusoid
Fitting
Entering an Initial Model
Symmetric
  SYMMETRIC FUNCTION
Voigt
Fitting
Entering an Initial Model
Gas Detector
Format
 GAS 2-D DETECTOR (ESRF)
Gaussian
Function
  GAUSSIAN
Fitting
Entering an Initial Model
General
Citation
Acknowledgement and Citation of
Geometric
Operations
Important Main Menu Commands
Geometrical
Transformations
The GEOMETRIC Sub-Menu
Geometry
Experiment
  GEOMETRY (EXPERIMENT)
GISAXS
The SAXS/GISAXS Interface
Glory Hole
Graphical Input
GPP
Coordinate Systems
Graphical
Input
Character
Graphical Input
Graphical Forms
Graphical forms
Graphical User Interface
General Instructions
Graphics User Interface: Introduction
Graphics
Annotation
  ANNOTATION LABEL
Customisation
  PAGE POSITION
High Quality
Publication Quality Graphs
Layout
Set
  SET LAYOUT STYLE
None
No Graphics
Output
  FAST IMAGE |   PRINT GRAPHICS
Problem
Missing Font
Missing Font Message at
Not Re-drawn
The Graphics is not
Printing
Graphics Output File Does
Publication
  PUBLICATION QUALITY
Publication Quality
Publication Quality Graphs
Graphics File
Close
  END GRAPHICS FILE
Graphics Layout
  PAGE POSITION
Graphics Output
PostScript
  POSTSCRIPT OPTIONS
Graphics System
The Graphics System
Graphics Window
Size
Graphics User Interface (GUI)
Grazing Incidence
The BEAM CENTRE Command | The SAXS/GISAXS Interface
Grid
Attributes
  SET GRID STYLE
Calibration
 FIT GRID PEAKS
Peak Search
 FIND PEAKS
Style
  SET GRID STYLE
Grid Lines
Style
The GUI OPTIONS Command
GUI
Colour
Coding
Graphics User Interface Colour
Form
Input
Graphical forms
From ``keyboard''
  GUI
General Instructions
Graphics User Interface: Introduction
Interfaces
Graphics User Interface: Introduction
Mask
Command
The GUI MASK Command
Output
Command
The GUI OUTPUT Command
Hamamatsu Photonics
 HAMAMATSU PHOTONICS
Header
Files
 BINARY (UNFORMATTED)
Text
FIT2D Terminal Output
Header File
Disable
Output
 BINARY (UNFORMATTED)
Enable
Output
 BINARY (UNFORMATTED)
Example
 BINARY (UNFORMATTED)
Help
On-line HELP |   ?
Calibration
 ? |  HELP
Keywords
The ``Pager''
On-line
On-line HELP
High-Pass
Filter
  SPATIAL FILTERING
Histogram
Image
Frequency
  HISTOGRAM
Pixel Value
Frequencies
  ENTROPY
History
Recall
FIT2D Prompts and Required
Hole Profile
Average
 LEARN HOLE PROFILE
Home Page
FIT2D
URL
Prerequisites
Icon.FIT2D.Creating
Creating a FIT2D Icon
Ideal/Distorted
Distortion Function
Definition
 INVERSE DISTORTED/IDEAL
IDL
 BINARY (UNFORMATTED)
Image
Addition
  WEIGHTED AVERAGE
Scalar
The MATHS Sub-Menu
Arithmetic
The MATHS Sub-Menu
Aspect Ratio
  ASPECT RATIO
Command
The GUI MOVEMENT Command
Display
  IMAGE
False Colour
False Colour Image Display
Division
The MATHS Sub-Menu
Example
Example of Dividing One
Scalar
The MATHS Sub-Menu
Explanation
The GUI MOVEMENT Command
Exponention
The MATHS Sub-Menu
Extend
The GEOMETRIC Sub-Menu
False Colour
  PLOT DATA
Filtering
The FILTER Sub-Menu
Graphical Input
  IMAGE
Histogram
  HISTOGRAM
Intensity
Scaling
The GUI Z SCALING
Layout
Set
  SET LAYOUT STYLE
Manipulation
The IMAGE PROCESSING (GENERAL) |   IMAGE
Maths
The MATHS Sub-Menu
Maximum Size
  DISPLAY LIMITS
Movement
The GUI MOVEMENT Command
Multiplication
  MULTIPLY
Scalar
The MATHS Sub-Menu
Normalisation
  NORMALISE
Operations
The IMAGE PROCESSING (GENERAL)
Arithmetic
The MATHS Sub-Menu
Geometrical
The GEOMETRIC Sub-Menu
Output
  FAST IMAGE
Reflection
  REFLECT
Rotation
  MOVE/ROTATE
Scaling
  OFFSET/SCALE
Size
Graphics User Interface (GUI) | The GUI OPTIONS Command |   PAGE POSITION
Smoothing
The FILTER Sub-Menu | The FILTER Sub-Menu
Statistics
The MATHS Sub-Menu
Subtraction
The MATHS Sub-Menu |   SUBTRACT
Thresholding
The MATHS Sub-Menu
Translation
  MOVE/ROTATE
Transposition
The GEOMETRIC Sub-Menu
Images
Addition
The MATHS Sub-Menu
Average
The FILE SERIES Interface
Composite Display
The FILE SERIES Interface
Display
The FILE SERIES Interface
Composite
The FILE SERIES Interface
Multiplication
The MATHS Sub-Menu
Subtraction
Example
Example of Dividing One
Image Display
Problem
No Image Output
Image Processing
The IMAGE PROCESSING (GENERAL)
Imaging Plate
Decay
Intensity
 DECAY CORRECTION
Imaging Plates
Fuji
Intensity Decay
 DECAY CORRECTION
Kodak
Intensity Decay
 DECAY CORRECTION
Important
Commands
Important Main Menu Commands
Index
Reporting Bugs, Bad Features,
INFO
Messages
Information, Warnings, and Error
INFO:
FIT2D Terminal Output
Information
Files
 BINARY (UNFORMATTED)
Help
  HELP
Messages
FIT2D Start-up | Information, Warnings, and Error | FIT2D Terminal Output
On-line
On-line HELP
Pixel Values
  PEEP
Program
  INFORMATION
Information Theory
Entropy
Calculate
  ENTROPY
Input
Byte
Data
 BINARY (UNFORMATTED) |  BINARY (UNFORMATTED)
Coordinate
Graphical Input
Data
Integer*2
 BINARY (UNFORMATTED)
Integer*4
 BINARY (UNFORMATTED)
Real*4
 BINARY (UNFORMATTED)
Empty String
FIT2D Prompts and Required
File
The GUI INPUT Command
Fit
Parameters
 INPUT PARAMETERS
Graphical Forms
Graphical forms
Interactive
 USER INTENSITIES
Keyboard
FIT2D Prompts and Required
Look-up Table
Correction
 LOAD LOOK-UP TABLE
Menu Commands
FIT2D Prompts and Required
Prompt
FIT2D Terminal Output
Spatial Distortion Function
 INPUT SPATIAL FUNCTION
Text
Graphical
Graphical Input
User Values
 USER INTENSITIES
Installation
Prerequisites
Integer
Character
Conversion
  I2C
Integer*2
Input
 BINARY (UNFORMATTED)
Integer*4
Input
 BINARY (UNFORMATTED)
Integrate
Command
The INTEGRATE Command
File Series
The FILE SERIES Interface
Integration
2-D Data
The INTEGRATE Command
Azimuth
The CAKE Command
Cake
Region
The CAKE Command
File Series
Integrating a Series of
Peaks
The MATHS Sub-Menu
Powder Rings
 Powder Diffraction Ring Integration
Intensities
Polarisation Effect
  POLARISATION EFFECT
Intensity
Display Range
  Z-SCALE
Linearisation
 LINEARISE INTENSITIES
Scaling
False Colour Image Display | The GUI Z SCALING
Intensity Decay
Fuji
Imaging Plates
 DECAY CORRECTION
Kodak
Imaging Plates
 DECAY CORRECTION
Intensity Scale
Colour Bar
Z Scaling
The GUI Z SCALING
Z Scaling
Colour Bar
The GUI Z SCALING
Interactive
Input
Data Values
 USER INTENSITIES
Interfaces
GUI
Graphics User Interface: Introduction
Internal
Storage
Arrays
  INTERNAL MEMORY
Interpolation
1-D
  1-D INTERPOLATION
Linear
  1-D INTERPOLATION
Surface
  SURFACE INTERPOLATION
INTLAUE
 BINARY (UNFORMATTED)
Introduction
Graphical User Interface
Graphics User Interface: Introduction
GUI
Graphics User Interface: Introduction
Keyboard Interface
The KEYBOARD INTERFACE: Introduction
Keyboard
Input
FIT2D Prompts and Required
Keyboard Interface
General Instructions
The KEYBOARD INTERFACE: Introduction
Main Menu
Important Main Menu Commands
Keywords
Help
The ``Pager''
Known Bugs
Known Bugs and Limitations
Kodak
Imaging Plates
Intensity Decay
 DECAY CORRECTION
LATEX
Problems
Old Version
LATEX $2_{\varepsilon }$ Instructions Do
Label
Style
  SET ANNOTATION STYLE
Labels
  ANNOTATION LABEL
Landscape
Format
A4
``Landscape'' Output
Law
Bragg
  BRAGGS' EQUATION
Layout
Graphics
Set
  SET LAYOUT STYLE
Page
  PAGE POSITION
Least Squares Fitting
Fit Sub-Menu
Left-Right
Inversion
Image
The GEOMETRIC Sub-Menu
Legal
Paper
Format
``Legal'' Paper Hard-copy Output
Leslie
Andrew
 BINARY (UNFORMATTED)
Light Graphics
System
The Graphics System
Limitations
Limitations, Bugs, and Unclear
Line
Colour
  SET COLOUR
Colours
  SET CURVE STYLES
Widths
  SET CURVE STYLES
Linear
Interpolation
  1-D INTERPOLATION
Linearisation
Film Data
  LINEARISE FILM
Fuji
Image Plate Data
  FUJI LINEARISATION
Linearise
Intensities
 LINEARISE INTENSITIES
Little Endian
Integer
Output
 BINARY (UNFORMATTED)
Log
Files
Creation
The MACROS / LOG
Log-file
Open
  OPEN LOG
Logarithm
Base 10
  LOGARITHM
Log File
Create
The MACROS / LOG
Look-Up Table
  COLOUR TABLE
Correction
Create
 LOOK-UP TABLE (SPATIAL DISTORTION)
Input
 LOAD LOOK-UP TABLE
Output
 STORE LOOK-UP TABLE
Set
The GUI OPTIONS Command
Looking Glass
Graphical Input
Lorentz
Correction
 POWDER DIFFRACTION
Lorentzian
Function
Fitting
Entering an Initial Model
Low-Pass
Filter
The FILTER Sub-Menu |   SPATIAL FILTERING
Macro
Close
  STOP MACRO
Commands
Useful
``KEYBOARD'' Interface Commands for
Example
A Macro Example
Files
The MACROS / LOG | Creation and Using Simple
Mode
Macro File
Open
  START MACRO
Run
The MACROS / LOG
Start
  START MACRO
Stop
The MACROS / LOG |   STOP MACRO
Macros
Appendix B: FIT2D Macro
Complicated
More Complicated Macros
Interactive
Questions
  QUESTION
Pause
  PAUSE
Timed
  SLEEP
User Messages
  MESSAGE
Wait
  WAIT
Mac Science
DIP-2000
 DIP-2000 (Mac Science)
MADNES
 INVERSE DISTORTED/IDEAL
Spatial Distortion
Correction
 Spatial Distortion Correction in
Main Menu
Commands
Important Main Menu Commands | The KEYBOARD INTERFACE: Command
Effects
Appendix D: Command Output | Appendix D: Command Output | Appendix D: Command Output
Prompt
FIT2D Terminal Output
Mar
File Format
Output
 DENZO MAR FORMAT
Marker
Colours
  SET CURVE STYLES
Styles
  SET CURVE STYLES
Types
  SET CURVE STYLES
MarResearch
Compressed Data
 MAR RESEARCH FORMAT /
Data Format
Input
 MAR RESEARCH FORMAT /
File Format
 BINARY (UNFORMATTED)
Overloaded Pixels
 MAR RESEARCH FORMAT /
Mask
The GUI MASK Command |  The Data Mask
Annulus
The GUI MASK Command
Arc
The GUI MASK Command
Circle
The GUI MASK Command
Clear
 CLEAR MASK
Colour
Set
 SET MASK COLOUR
Command
GUI
The GUI MASK Command
Data
The GUI MASK Command
Definition
 DEFINE MASK
Display
 DISPLAY MASK
Menu
The GUI MASK Command
Polygon
The GUI MASK Command
Threshold
The GUI MASK Command
Masked Elements
Definition
 THRESHOLD MASKING
Mathematical
Operations
Images
The MATHS Sub-Menu
Maths
Image
The MATHS Sub-Menu
Maximum
Image Pixels
  DISPLAY LIMITS
Maximum Value
Masking
The GUI MASK Command
MCA
Format
Output
 MCA FORMAT
Mean
  STATISTICS
Measure
Distance
The GUI DISPLAY Command
Measurement
Spatial Distortion
Defining a Spatial Distortion
Median
Filter
The FILTER Sub-Menu |   MEDIAN FILTER
Memory
Array
Graphics User Interface (GUI) | The ``MEMORY''
Dynamic Allocation
Dynamic Memory Allocation
Recall
  RECALL
Recovery
  RECALL
Save
  STORE
Stock Data
The GUI EXCHANGE Command
Store
  STORE
Memory (System)
Requirements
  DIMENSIONS
Memory Allocation
Error
``Keyboard'' Interface Start-Up
Failure
``Keyboard'' Interface Start-Up
Menu
Main
Keyboard Interface
Important Main Menu Commands
Masking
The GUI MASK Command
Prompt
FIT2D Terminal Output
Menu Commands
Important Main Menu Commands
Messages
Error
FIT2D Start-up | Information, Warnings, and Error | FIT2D Terminal Output
Information
FIT2D Start-up | Information, Warnings, and Error | FIT2D Terminal Output
Macros
  MESSAGE
Warning
FIT2D Start-up | Information, Warnings, and Error | FIT2D Terminal Output
MFIT
The MFIT (MULTIPLE 1-D
Citation
Acknowledgement and Citation of
Minimisation
Model
Fit Sub-Menu
Minimise
 MINIMISE
Minimum Value
Masking
The GUI MASK Command
Mirror
Image
  FLIP
Mirror Image
  REFLECT
Missing Font
Problem
Graphics
Missing Font Message at
Mode
command-line
Using FIT2D in ``Command-line''
Model
Definition
1-D
Entering an Initial Model
Fitting
  FIT | Fit Sub-Menu
1-D
The MFIT (MULTIPLE 1-D
Modification
Text
Modifying Text
Molecular Dynamics
 IMAGEQUANT
MOSFLM
 BINARY (UNFORMATTED)
Movement
Command
The GUI MOVEMENT Command
Multiple
Integration
The CAKE Command
Multiple Fitting
1-D
The MFIT (MULTIPLE 1-D
Multiplication
Constant
  CMULTIPLY (Constant MULTIPLY)
Image
  MULTIPLY
Images
The MATHS Sub-Menu
Scalar
Image
The MATHS Sub-Menu
Murry
Andrew
 POWDER DIFFRACTION
Network
Use
No Graphics
New Versions
FIT2D
FIT2D Old and New
No
Backing Store
The Graphics is not
Graphics
No Graphics
Noise
Filtering
The FILTER Sub-Menu | The FILTER Sub-Menu
Photon
  POISSONIAN NOISE
Poisson Statistics
  POISSONIAN NOISE
Non-Linear
Filtering
The FILTER Sub-Menu
Intensity Response
Correction
 LINEARISE INTENSITIES
Non-orthogonality
Detector
Calibration
The CALIBRANT Command
Fit
The TILT Command |  TILT/BEAM CENTRE
Non-Uniform Response
Intensity
Non-Uniformity of Sensitivity Response
Normalisation
Image
  NORMALISE
Normalise
Image
  NORMALISE
NOTE
Messages
Information, Warnings, and Error
Not Re-drawn
Graphics Window
The Graphics is not
Problem
Graphics
The Graphics is not
Null
Character
Input
FIT2D Prompts and Required
Number
Reverse
File Sequence
Examples of the SEQUENCE
Old Version
FIT2D
FIT2D Old and New
Old Versions
FIT2D
FIT2D Old and New
Olof
Svensson
 DECAY CORRECTION
On-line
Help
On-line HELP
Open
Log-file
  OPEN LOG
Log File
The MACROS / LOG
Macro
  START MACRO
Operating System
Command
FIT2D Prompts and Required
Operation
Sequence
  SEQUENCE
Operations
Arithmetic
Important Main Menu Commands
Filtering
Important Main Menu Commands
Geometric
Important Main Menu Commands
Image
Arithmetic
The MATHS Sub-Menu
Images
The IMAGE PROCESSING (GENERAL)
Style Control
Important Main Menu Commands
Visualisation
Important Main Menu Commands
Optimise
 MINIMISE
Options
Command Line
Command Line Options
OTOKO
Data Format
 BSL FORMAT
Otwinowski
Zbyszek
 BINARY (UNFORMATTED)
Output
CHIPLOT
File Format
 CHIPLOT
ASCII
 CHIPLOT |  SPREAD SHEET
Binary
File Format
 BINARY (UNFORMATTED)
Command
GUI
The GUI OUTPUT Command
Conventions
 BINARY (UNFORMATTED)
Data
  OUTPUT DATA |   OUTPUT DATA
Fit
Results
 RESULTS
Format
MCA
 MCA FORMAT
Graphics
  FAST IMAGE |   PRINT GRAPHICS
Look-up Table
Correction
 STORE LOOK-UP TABLE
Raster
 BINARY (UNFORMATTED)
Spatial Distortion Function
 OUTPUT SPATIAL FUNCTION
Spread Sheet
File Format
 SPREAD SHEET
TIFF
 TIFF INTEGERS
File Format
 TIFF INTEGERS
Over-loaded
Pixels
  SELECT PIXEL OPERATION
Overloaded Pixels
MarResearch
 MAR RESEARCH FORMAT /
Page
Layout
  PAGE POSITION
Size
The GUI OPTIONS Command |   PAGE POSITION
Pager
FIT2D Prompts and Required | The ``Pager''
Page Coordinates
  PAGE POSITION | Coordinate Systems
Page Format
Landscape
``Landscape'' Output
Paper
Format
Problem
``Legal'' Paper Hard-copy Output
Parameter
Output
 OUTPUT PARAMETERS
Parameters (Fit)
Input
 INPUT PARAMETERS
Paul Dierckx
Acknowledgements
Pause
Macro
  PAUSE
Timed
Macros
  SLEEP
PDS
 POWDER DIFFRACTION
Peak
Integration
The MATHS Sub-Menu
Peak Fitting
1-D
The MFIT (MULTIPLE 1-D
Peak Profile
Learn
 LEARN HOLE PROFILE
Peak Search
 FIND PEAKS
Personal Computers
Windows
Running FIT2D on Windows
Photometrics
File Format
Compressed
 PMC FORMAT
Photon Factory
 HAMAMATSU PHOTONICS
Photonics
Hamamatsu
 HAMAMATSU PHOTONICS
Photon Energy
Wavelength
Conversion
  CALCULATOR | Examples of Calculator Usage
Photon Noise
  POISSONIAN NOISE
Piltz
Ross
 PLATYPUS CORRECTION FILE
Pixel
Selection
Operations
  SELECT PIXEL OPERATION
Pixels
Over-loaded
  SELECT PIXEL OPERATION
Pixel Information
  PEEP
Pixel Limits
Image Display
  DISPLAY LIMITS
Pixel Values
Frequency
Histogram
  HISTOGRAM
PLATYPUS
 PLATYPUS CORRECTION FILE
Plot
3-D Surface
  3-D SURFACE PLOT
pmi2pmc
 PMC FORMAT
Poisson
Noise
  POISSONIAN NOISE
Polarisation
Correction
Correction for Polarisation Effects
Polarisation Effect
Intensities
  POLARISATION EFFECT
Polar Coordinate
Transformation
 R/THETA RE-BINNING
Polygon
Masking
The GUI MASK Command
Polygon Region
Statistics
The MATHS Sub-Menu
Polynomial
Function
Fitting
Entering an Initial Model
Position
Page
  PAGE POSITION
Positions
Axis
Tick Marks
  SET TICK POSITIONS
PostScript
Black'n'White
  POSTSCRIPT OPTIONS
Options
  POSTSCRIPT OPTIONS
Output
Problems
Graphics Output File Does
Powder Diffraction
The TILT Command |  PLATYPUS CORRECTION FILE | Fit Sub-Menu |  Powder Diffraction Ring Integration |  POWDER DIFFRACTION |  R/THETA RE-BINNING |  TILT/BEAM CENTRE
Data Format
3CAM
 3CAM
Powder Diffraction Standard
 POWDER DIFFRACTION
Powder Ring
Fit
The TILT Command |  TILT/BEAM CENTRE
Integration
 Powder Diffraction Ring Integration
Simulate
  RING (ADD POWDER RING)
Power Spectrum
  POWER SPECTRUM
Predictor
  PREDICTOR
Prerequisites
Prerequisites
Princeton
File Format
 PRINCETON CCD FORMAT
Printing
Problem
Graphics
Graphics Output File Does
Problem
FIT2D
Not Available
Command not found
LATEX $2_{\varepsilon }$
Graphics
LATEX $2_{\varepsilon }$ Instructions Do
Backing Store
The Graphics is not
Documentation
Reporting Bugs, Bad Features,
Graphics
Missing Font
Missing Font Message at
Not Re-drawn
The Graphics is not
Output
Graphics Output File Does
Image Display
No Image Output
Memory Allocation
Failure
``Keyboard'' Interface Start-Up
Silicon Graphics
X-servers
The Graphics is not
Start-up
Failure
Failure in FIT2D Start-up
TEX
Graphics
LATEX $2_{\varepsilon }$ Instructions Do
Problem¡`ESRF Data Format''
 ``ESRF Data Format''
Problems
LATEX
Old Version
LATEX $2_{\varepsilon }$ Instructions Do
Processing
Automatic
Sequences
  SEQUENCE
Batch
No Graphics
Images
The IMAGE PROCESSING (GENERAL)
Profile
Radial
 POWDER DIFFRACTION |  RADIAL PROFILE
Program
Arrays
Dynamic Memory Allocation
Array Sizes
Program Dimensions
Information
  INFORMATION
Log File
Creation
The MACROS / LOG
State
  INFORMATION
Program Termination
  QUIT
Program Arrays
Size
  DIMENSIONS
Program Log
Create
The MACROS / LOG
Open
  OPEN LOG
Program Termination
  EXIT
Program Variable
  CALCULATOR
Program Variables
Example
A Macro Example
Prompt
Input Value
FIT2D Terminal Output
Main Menu
FIT2D Terminal Output
Prompts
FIT2D Prompts and Required
Ambiguous
Reporting Bugs, Bad Features,
Explanation
FIT2D Prompts and Required
Protein Crystallography
Data Analysis
DENZO
 BINARY (UNFORMATTED)
MOSFLM
 BINARY (UNFORMATTED)
Publication
Graphics
  PUBLICATION QUALITY
Quality
Publication Quality Graphs
Q-Space
The INTEGRATE Command | The CAKE Command
Questions
Interactive
Macros
  QUESTION
Question Mark
  ?
Radial
Profile
 POWDER DIFFRACTION
Profiles
 R/THETA RE-BINNING
Radial Profile
 RADIAL PROFILE
Radioactive
Sources
Non-Uniformity of Sensitivity Response
Range
Display
Intensity
  Z-SCALE
Valid Input
FIT2D Prompts and Required
Raster
Output
 BINARY (UNFORMATTED)
Re-binning
Data
  REBIN |   RE-BIN
Re-number
File Sequence
Examples of the SEQUENCE
Re-size
Data Region
The GEOMETRIC Sub-Menu
readline
Acknowledgements
Real*4
Input
 BINARY (UNFORMATTED)
Real Space
Reciprocal Space
Conversion
  UNIT CELL PARAMETERS
Recall
Command Line
FIT2D Prompts and Required
Memory
  RECALL
Reciprocal
  RAISE TO A POWER
Reciprocal Space
Real Space
Conversion
  UNIT CELL PARAMETERS
Reference
FIT2D
Usage
Acknowledgement and Citation of
Refinement
  FIT
Rietveld
 POWDER DIFFRACTION
Reflect
Image
  FLIP
Reflection
  FLIP |   TRANSPOSE
Image
  REFLECT
Region Of Interest
``Region of Interest'' (ROI) | ``Region of Interest'' (ROI) |   REGION |   ROI (Region Of Interest)
Remove
Variable
  UN-DEFINE VARIABLE
Reporting
Bugs
Reporting Bugs, Bad Features,
Reset
Mask
 CLEAR MASK
Residuals
Fit
Fit Sub-Menu
Spline Fit
Distortion
 RESIDUALS OF FIT
Restrictions
X-11
X-11 Restrictions
Results
Fit
Display
 RESULTS
Reverse
Numbering
File Sequence
Examples of the SEQUENCE
Reverse Polish
Calculator
  CALCULATOR
Rietveld
Refinement
 POWDER DIFFRACTION |  POWDER DIFFRACTION
Ring
Simulate
  RING (ADD POWDER RING)
ROI
``Region of Interest'' (ROI) |   ROI (Region Of Interest)
Store
  INTERNAL MEMORY
Root
Square
  RAISE TO A POWER
Rotate
Colour Table
The GUI OPTIONS Command |   ROTATE LUT
Rotation
Image
  MOVE/ROTATE
Rubber-band
Graphical Input
Run
Macro
The MACROS / LOG
Sample Distance
Calibration
The CALIBRANT Command
Save
Data
  OUTPUT DATA
File
The GUI OUTPUT Command
Fit Parameters
 OUTPUT PARAMETERS
Spatial Distortion Function
 OUTPUT SPATIAL FUNCTION
SAXS
The INTEGRATE Command | The CAKE Command | The SAXS/GISAXS Interface
Scale Factor
Image
  OFFSET/SCALE
Scaling
Intensity
False Colour Image Display
Scaling Factor
Poisson Noise
  VARIANCES DEFINITION
Scientific
Interfaces
Graphics User Interface: Introduction
Scientific Interfaces
Graphics User Interface (GUI)
Screen
Colour Mapping
X-11 Restrictions
Screen Output
FIT2D Terminal Output
Script
''C''-shell
Command Files (Scripts) for
Unix
Command Line Options
Batch Mode
Command Files (Scripts) for
Search
The ``Pager''
Grid Peaks
 FIT GRID PEAKS
Select
Pixel
Operation
  SELECT PIXEL OPERATION
Sequence
  SEQUENCE | Appendix B: FIT2D Macro
File
  SEQUENCE
Processing
  SEQUENCE
Files
Defining a File Series
Operations
Files
  SEQUENCE
Sequence Processing
Automatic
The MACROS / LOG | Creation and Using Simple
Series
File
Processing
  SEQUENCE
Files
Defining a File Series
Set
ROI
  PIXEL REGION
ROI
  ROI (Region Of Interest)
Aspect Ratio
The GUI OPTIONS Command
Look-Up Table
The GUI OPTIONS Command
Mask
Colour
 SET MASK COLOUR
Maximum
Image
The MATHS Sub-Menu
Minimum
Image
The MATHS Sub-Menu
Scaling
Axes
  AXES SCALES
Title
The GUI OPTIONS Command
Style
  SET TITLE STYLE
X-axis Label
Style
  SET X-LABEL STYLE
Y-axis Label
Style
  SET Y-LABEL STYLE
Set-Up
Fitting
 SET UP
Setting
Graphics
Layout
  SET LAYOUT STYLE
Shared Memory
FIT2D as a Sub-Process
Shot Noise
  POISSONIAN NOISE
Signed
Integer
Input
 BINARY (UNFORMATTED)
Silicon
The CALIBRANT Command
Silicon Graphics
X-servers
Problem
The Graphics is not
Simulate
Powder Ring
  RING (ADD POWDER RING)
Sine
Function
Fitting
Entering an Initial Model
Sinusoid
Function
Fitting
Entering an Initial Model
Size
Graphics Window
Graphics User Interface (GUI)
Image
Graphics User Interface (GUI) | The GUI OPTIONS Command |   PAGE POSITION
Page
The GUI OPTIONS Command |   PAGE POSITION
Programs Arrays
  DIMENSIONS
Skewness
  STATISTICS
Sleep
Timed
Macros
  SLEEP
Small Angle Scattering
The SAXS/GISAXS Interface
Smooth
Data
  SMOOTH
Smoothing
The FILTER Sub-Menu |   BLUR |   SMOOTH
Median
The FILTER Sub-Menu
Median Filter
  MEDIAN FILTER
Top-Hat
The FILTER Sub-Menu
Sodium Chloride
The CALIBRANT Command
Space
Input
FIT2D Prompts and Required
Spatial Distortion
MADNES
Correction
 Spatial Distortion Correction in
Calibration
Calibration Sub-menu
Correction
Calibration Sub-menu |  SPATIAL CORRECTION
Fast
 FAST CORRECTION
Look-up Table
Create
 LOOK-UP TABLE (SPATIAL DISTORTION)
Input
 LOAD LOOK-UP TABLE
Output
 STORE LOOK-UP TABLE
Measurement
Defining a Spatial Distortion
Spatial Distortion Function
Input
 INPUT SPATIAL FUNCTION
Output
 OUTPUT SPATIAL FUNCTION
spec
 FLAT-FIELD CORRECTION
Spectrum Analysis
  POWER SPECTRUM
Spline
Function
Fitting
Acknowledgements
Spline Fit
Residuals
 RESIDUALS OF FIT
Spread Sheet
File Format
Output
 SPREAD SHEET
Spy-glass
Graphical Input
Square
Elements
  RAISE TO A POWER
Pixels
  ASPECT RATIO
Square Root
  RAISE TO A POWER
Standard Deviation
  STATISTICS
Start
Macro
  START MACRO
Start-up
FIT2D
Start-up of FIT2D
Static
Linked
Version
Prerequisites
Statistics
Image
The MATHS Sub-Menu
Stop
Macro
The MACROS / LOG
Store
Data
  INTERNAL MEMORY
ROI
  INTERNAL MEMORY
Spatial Distortion Function
 OUTPUT SPATIAL FUNCTION
Stress
Deviatoric
The CAKE Command
String
Concatenation
  CONCATENATION
Style
Annotation Labels
  SET ANNOTATION STYLE
Arrows
  SET ARROW STYLE
Axes
  SET AXES STYLE |   SET ENUMERATION STYLE
Curves
The GUI OPTIONS Command
Enumeration
  SET ENUMERATION STYLE
Error Bars
  SET CURVE STYLES
Grid
  SET GRID STYLE
Grid Lines
The GUI OPTIONS Command
Lines
  SET CURVE STYLES
Markers
  SET CURVE STYLES
Text
  SET FONT
Style Control
Operations
Important Main Menu Commands
Sub-Process
FIT2D
FIT2D as a Sub-Process
Subtraction
Images
The MATHS Sub-Menu |   SUBTRACT
Example
Example of Dividing One
Sum
Data
  ADD
Surface
Fit
 SURFACE POLYNOMIAL
Fitting
Acknowledgements
Plot
  3-D SURFACE PLOT
Svensson
Olof
 DECAY CORRECTION
Swap
Bytes
The GUI INPUT Command
Current Data¡`Memory''
The GUI EXCHANGE Command
Memory/Current Data
  EXCHANGE
Variances/Current Data
  V2C
SYMBOL
  SYMBOL
Terminal
Window
FIT2D Start-up
Terminal Output
FIT2D Terminal Output
Test
Interface
The TEST Interface
Testing
The TEST Interface
Text
Colour
  SET COLOUR
Concatenation
  CONCATENATION
Fonts
Fonts for Text Output
Input
Graphical
Graphical Input
Modification
Modifying Text
Output
Fonts
Fonts for Text Output
Style
  SET FONT
X-axis Label
  X-AXIS LABEL
Y-axis Label
  Y-AXIS LABEL
Z-axis Label
  Z-AXIS LABEL
Thomas
Ursby
Command Files (Scripts) for
Threshold
Images
The MATHS Sub-Menu
Masking
The GUI MASK Command
Thresholding
Data
  THRESHOLD
Display
Intensity
  Z-SCALE
Images
The MATHS Sub-Menu
Tick Mark
Positions
  SET TICK POSITIONS
TIFF
 IMAGEQUANT |  TIFF
File Format
Output
 TIFF INTEGERS
Tilt
Detector
Calibration
The CALIBRANT Command
Determination
The TILT Command
Tilt Angles
Definition
Definition of the Tilt
Times Roman
Fonts for Text Output
Time Series
The FILE SERIES Interface
Title
  TITLE
Set
The GUI OPTIONS Command
Style
Changing
  SET TITLE STYLE
Top-Bottom
Inversion
Image
The GEOMETRIC Sub-Menu
Top-Hat
Convolution
  BLUR |   SMOOTH
Smoothing
The FILTER Sub-Menu
Total
Intensity
  STATISTICS
Transformation
Geometric
The GEOMETRIC Sub-Menu
Polar Coordinates
 R/THETA RE-BINNING
Translation
Image
  MOVE/ROTATE
Transpose
  FLIP
Array
  TRANSPOSE
Transposition
Array
The GEOMETRIC Sub-Menu
Triangulation
Interpolation
  SURFACE INTERPOLATION
TrueColor
X-11 Restrictions
Two-Theta Angle
Calculate
  BRAGGS' EQUATION
Un-define
Variable
  UN-DEFINE VARIABLE | Variables
Uncovered Graphics
Not Re-drawn
The Graphics is not
Unformatted
File
Output
 BINARY (UNFORMATTED)
Uniformity of Response
Non-Uniformity of Sensitivity Response
Calibration
 FLAT-FIELD CORRECTION
Unit Cell
Conversion
Real-Reciprocal
  UNIT CELL PARAMETERS
Unix
Script
Command Line Options
Batch Mode
Command Files (Scripts) for
Unknown
Data
Formats
The GUI INPUT Command
file Format
 UNKNOWN
Unsigned
Integer
Input
 BINARY (UNFORMATTED)
URL
FIT2D
Home Page
Prerequisites
Ursby
Thomas
Command Files (Scripts) for
Usage
Conditions
Appendix E: Conditions of
Use
Network
No Graphics
User
Feed-back
Reporting Bugs, Bad Features,
User Defined
Calibration Sample
The CALIBRANT Command
User Escape
FIT2D Prompts and Required
User Help
  ?
User Messages
Macros
  MESSAGE
Valid Input
Range
FIT2D Prompts and Required
Values
Over-loaded
  SELECT PIXEL OPERATION
Variable
  VARIABLE
Concatenation
  CONCATENATION
Definition
  DEFINE VARIABLE
Command Line
Variable Definition
Example
A Macro Example
Program
  CALCULATOR
Remove
  UN-DEFINE VARIABLE
Un-define
  UN-DEFINE VARIABLE | Variables
Variables
Variables
List
  LIST VARIABLES
Variance
Arrays
Graphics User Interface (GUI) | Dynamic Memory Allocation
Variances
Current Data
Swap
  V2C
Versatile
Integration
The CAKE Command
Version
FIT2D
Old
FIT2D Old and New
Versions
FIT2D
  CHANGES
Version Number
FIT2D
FIT2D Terminal Output
Virtual Memory
Allocation
Dynamic Memory Allocation
Problem
``Keyboard'' Interface Start-Up
Visualisation
Operations
Important Main Menu Commands
Voigt
Function
Fitting
Entering an Initial Model
Wait
Macro
  WAIT
Warning
Messages
FIT2D Start-up | Information, Warnings, and Error | Information, Warnings, and Error | FIT2D Terminal Output
WARNING:
FIT2D Terminal Output
Wavelength
Calculate
  BRAGGS' EQUATION
Calibration
The CALIBRANT Command
Photon Energy
Conversion
  CALCULATOR
Wax Ring
Fit
The TILT Command |  TILT/BEAM CENTRE
Window
Data
``Region of Interest'' (ROI) |   REGION
Windows
Running FIT2D on Windows
World Wide Web
FIT2D
Home Page
Prerequisites
Write
Output
File
  OUTPUT DATA
X-11
Colour Mapping
X-11 Restrictions
Restrictions
X-11 Restrictions
X-axis
Text Label
  X-AXIS LABEL
X-axis Label
Style
Changing
  SET X-LABEL STYLE
X-ray Image Intensifier
Detector
 HAMAMATSU PHOTONICS
X-Ray Image Intensifier
Data Collection Sequence for
Photometrics
Compressed
 PMC FORMAT
Princeton
 PRINCETON CCD FORMAT
X-servers
Silicon Graphics
Problem
The Graphics is not
XRII
Data Collection Sequence for
Y-axis
Text Label
  Y-AXIS LABEL
Y-axis Label
Style
Changing
  SET Y-LABEL STYLE
Z-axis
Display Range
  Z-SCALE
Text Label
  Z-AXIS LABEL
Z Scaling
Command
The GUI Z SCALING



Andrew Hammersley
2004-01-09