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 ID14-EH1 DENZO INPUT FILE -[to run in background use denzo.com file at end of file]
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 Title 'ID14-EH1 example'
[detector format and beam stop shadow]
 format ccd adsc unsupported-q210
[ format ccd adsc unsupported-q210 binned ]
[to mask beamstop for example
 ignore quadrilateral 111.8 116.2 108.0 223.0 112.4 223.0 114.4 115.6
 circle 112.7 112.1 4.6]
 goniostat single axis
 goniostat alingment 0 0
[beam parameters]
 polarization 0.99
 wavelength 0.934
 profile fitting radius 15.0
 weak level 5.0
 error positional 0.015
 error density 1.35
[information for the data collection update with list command]
 cassette rotx 0.019 roty 0.095 rotz 0.0
 crossfire x -0.037 y -0.072 xy 0.004
 oscillation start 80.00
 oscillation range 1.00
 x beam 102.5 y beam 104.5
 distance 150.00
 mosaicity 0.3
 resolution limits 50.00 3.50
 process together 5 [option in HKL2000]
 space group C2
 spindle axis 0 0 1 vertical axis 1 0 0
 sector 1 to 200
[file information and spot definition]
 raw data file './name_e1_1_###.mccd'
 output file 'x/name_pk_###.x'
 box 2.0 2.0
 overlap spot
 spot radius 0.3
 background radius 0.4

 [for auto indexing use following command line]
 [ peak search file 'peaks.file']
 waiting time 40 [on-line processing]
 write predictions go


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 TO RUN DENZO in background
 =========
 denzo.com
 =========
 denzo << eof > denzo.log
 @denzo.dat
 @refine.dat
 eof
========================
 refine.dat example file
 ========================
 start refinement
 fit x beam y beam go go
 fit crystal rotx roty rotz cell go go go
 fit all
 fix distance
 go go go go go go
 calculate go